genotyping Concept

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research area of

• Anglin, Noelle, Leader for Conserving Biodiversity for The Future So6, CIP, CIP
• Arif, Muhammad, Driver, ICARDA, ICARDA
• Ashish, Kumar, Senior Research Fellow, ICRISAT, ICRISAT
• Badoni, Saurabh, IRRI, IRRI
• Baum, Michael, BCI Program and Morocco Platform Director, ICARDA, ICARDA
• BEYENE, Yoseph, Regional Maize Breeding Coordinator - Africa & Maize Breeder - Eastern Africa, CIMMYT, CIMMYT
• Bhattacharjee, Ranjana, Molecular Geneticist, IITA, ICRISAT
• BURGUEÑO FERREIRA, Juan Andres, Senior Biometrician / Head of BSU, CIMMYT, CIMMYT
• Chamarthi, Siva, IITA, ICRISAT
• Cobb, Joshua Nathaniel, IRRI
• Das, Roma, Scientific Officer, ICRISAT, ICRISAT
• Deshpande, Santosh P, Scientist (Molecular Breeding), ICRISAT, ICRISAT
• Dessie, Tadelle, Principal Scientist - Genetics/Breeding, ILRI, ILRI
• Dixit, Shalabh, Scientist-Plant Breeder, IRRI, IRRI
• Dizon, Joshua, IRRI
• Djouaka, Rousseau, Molecular Entomologist, IITA, IITA
• DREISIGACKER, Susanne, Wheat Molecular Breeding, CIMMYT, CIMMYT
• DUVEILLER, Etienne, Director Research for Development, AFRICARICE, AfricaRice
• Eshwar, K, Scientific Associate, ICRISAT, ICRISAT
• Gaur, Pooran P.M., Director, Research Program (Asia), ICRISAT, ICRISAT
• Gedil, Melaku, IITA, IITA
• GEMENET, Dorcus Chepkesis, Breeding Simulation Specialist, CIMMYT, CIMMYT
• Ghislain, Marc, Leader of Biotechnology, CIP, CIP
• Gouda, Arnaud, PHD Student, AFRICARICE, AfricaRice
• Goungoulou, Alphonse Junior, DataBase Manager, AFRICARICE, AfricaRice
• Gruneberg, Wolfgang, Senior Scientist, CIP, CIP
• Guignon, Valentin, Bioinformatics Specialist - Guignon, The Alliance of Bioversity International and CIAT, The Alliance of Bioversity and CIAT
• Hamwieh, Aladdin, Breeder, Biotechnologist and Egypt Country Manager, ICARDA, ICARDA
• HE, Xinyao, Wheat Pathology, CIMMYT, CIMMYT
• HE, Zhonghu, Wheat Breeder, CCR, CIMMYT, CIMMYT
• HEARNE, Sarah Jane, Maize Molecular Geneticist/Pre-breeder, CIMMYT, CIMMYT
• Himabindu, Kudapa, Scientist- Genomics & Molecular Breeding, ICRISAT, ICRISAT
• Ignacio, John Carlos, Assistant Scientist, IRRI, IRRI
• Ismail, Abdelbagi, Regional Representative, Africa, CESD, ILRI
• Janila, P, Senior Scientist (Groundnut Breeding), ICRISAT, ICRISAT
• Juanillas, Venice Margarette, Officer, IRRI, IRRI
• Kemp, Steve, Program Leader, Livestock Genetics, ILRI, ILRI
• Khan, Aamir, Research Associate, ICRISAT, ICRISAT
• Kujur, Alice, Research Associate, ICRISAT, ICRISAT
• Kumar, Arvind, Senior Scientist, IRRI, ICRISAT
• Leung, Hei, Principal Scientist, IRRI, IRRI
• Lorieux, Mathias, GENETICIST, The Alliance of Bioversity International and CIAT, The Alliance of Bioversity and CIAT
• MAGOROKOSHO, Cosmos, Maize Breeder - Southern Africa & CCR, CIMMYT, CIMMYT
• Mahendar, Thudi, Senior Scientist, ICRISAT, CIMMYT
• Mahuku, George, Senior Plant Pathologist for Eastern, Southern and Central Afric, IITA, The Alliance of Bioversity and CIAT
• MAKUMBI, Dan, Maize Breeder - Eastern Africa, CIMMYT, CIMMYT
• Mansueto, Locedie, CONSULTANT, IRRI, IRRI
• Martinez, Carlos, Laboratory Research Technician, CIMMYT, The Alliance of Bioversity and CIAT
• McNally, Kenneth, Senior Scientist II, IRRI, IRRI
• Menkir, Abebe, Maize Breeder, IITA, IITA
• Mrode, Raphael, Principal Scientist - Quantitative Geneticist in Dairy, ILRI, ILRI
• Mwacharo, Joram, ICARDA, ICARDA
• Nazari, Kumarse, Cereal Pathologist, ICARDA, ICARDA
• Ndjiondjop, Marie-Noelle, Molecular Biologist, GRiSP Africa Theme 1 Leader, Head of Geneti, AFRICARICE, AfricaRice
• Obala, Jimmy, Intern, ICRISAT, ICRISAT
• Ojango, Julie, Senior Scientist - Quantitative Genetics/Animal Breeding, ILRI, ILRI
• Okoth, Edward, Epidemiologist/Field Team Coordinator & Institutional Veterinarian, ILRI, ILRI
• OLSEN, Michael Scott, Molecular Breeding and Trait Pipeline Coordinator, CIMMYT, CIMMYT
• Pandey, Manish K, Scientist Genomics, ICRISAT, ICRISAT
• PEREZ RODRIGUEZ, Paulino, Consultant, CIMMYT, CIMMYT
• Pradeep, Ruperao, Consultant, ICRISAT, ICRISAT
• Raatz, Bodo, Plant Breeder, The Alliance of Bioversity International and CIAT, The Alliance of Bioversity and CIAT
• Rajeev, Gupta, Principal Scientist, ICRISAT, ICRISAT
• RASHEED, Awais, Adjunct-Associate Scientist, CIMMYT, CIMMYT
• Rathore, Abhishek, Theme Leader & Principal Scientist, ICRISAT, ICRISAT
• Reinke, Russell F, Program Lead - Healthier Rice, IRRI, IRRI
• REYNOLDS, Matthew Paul, Wheat Physiologist El Batan, CIMMYT, CIMMYT
• Roorkiwal, Manish, Scientist, Genomics & Molecular Breeding, ICRISAT, CIMMYT
• Roux, Nicolas, Senior Scientist - Roux, The Alliance of Bioversity International and CIAT, The Alliance of Bioversity and CIAT
• Ruas, Max, Information System Analyst - Ruas, The Alliance of Bioversity International and CIAT, The Alliance of Bioversity and CIAT
• SANSALONI, Carolina Paola, High-throughput Genotyping/Sequencing, CIMMYT, CIMMYT
• Sardos, Julie, Scientist, The Alliance of Bioversity International and CIAT, The Alliance of Bioversity and CIAT
• Saxena, Rachit, Scientist (Applied Genomics), ICRISAT, CIMMYT
• SEHGAL, Deepmala, Wheat Geneticist/QTL Deployment Coordinator, CIMMYT, CIMMYT
• Shah, Trushar, Integrated Breeding Platform (IBP) Hub Manager, IITA, CIMMYT
• SINGH, Pawan Kumar, Head, Pathology, CIMMYT, CIMMYT
• Singh, Uma, CIP, CIP
• Singh, Vikas, Regional Breeding Lead & Co-Ordinator, ICRISAT, ICRISAT
• Sreenivasulu, Nese, Head, Applied Functional Genomics and Phenomics Cluster, Grain Quality and Nutrition Center, Strategic Innovation Platform, IRRI, IRRI
• Srinivasan, Samineni, Senior Scientist, ICRISAT, ICRISAT
• Srivastava, Rakesh K, Principal Scientist (Genomics & Trait Discovery), ICRISAT, ICRISAT
• SUKUMARAN, Sivakumar, Scientist - Wheat Pre-breeding for heat, drought and yield potential, CIMMYT, CIMMYT
• Swamy, Mallikarjuna, Senior Scientist I, IRRI, IRRI
• Swennen, Rony, Banana Breeder, IITA, The Alliance of Bioversity and CIAT
• Tohme, Joe, Lever Director, The Alliance of Bioversity International and CIAT, The Alliance of Bioversity and CIAT
• Udupa, Sripada M., Senior Scientist, Biotechnology, ICARDA, ICARDA
• ULAT, Victor Jun, Applied Bioinformatics Specialist, CIMMYT, CIMMYT
• Upadhyaya, HD, ICRISAT, ICRISAT
• Vanika, Garg, Research Scholar, ICRISAT, ICRISAT
• Virk, Parminder Singh, Head Functional Unit, The Alliance of Bioversity International and CIAT, The Alliance of Bioversity and CIAT
• Vishwakarma, Manish, Assistant Breeder, CIMMYT, CIMMYT
• Wang, Hui, Research Fellow, The Alliance of Bioversity International and CIAT, The Alliance of Bioversity and CIAT
• Wenzl, Peter, Program Leader, The Alliance of Bioversity International and CIAT, The Alliance of Bioversity and CIAT
• XU, Yunbi, Maize Molecular Breeder - Asia, CIMMYT, CIMMYT
• ZHANG, Xuecai, Maize Molecular Breeder - Latin America, CIMMYT, CIMMYT

subject area of

• 1k-RiCA (1K-Rice Custom Amplicon) a novel genotyping amplicon-based SNP assay for genetics and breeding applications in rice.
• A High-throughput Genomic Tool: Diversity Array Technology Complementary for Rice Genotyping
• A Multidisciplinary Phenotyping and Genotyping Analysis of a Mapping Population Enables Quality to Be Combined with Yield in Rice.
• A QTL controlling low temperature induced spikelet sterility at booting stage in rice
• A SSR Linkage Map of Maize×Teosinte F2 Population and Analysis of Segregation Distortion
• A SSR kit to study genetic diversity in chickpea ( Cicer arietinum L.)
• A combinatorial approach of comprehensive QTL-based comparative genome mapping and transcript profiling identified a seed weight-regulating candidate gene in chickpea
• A diagnostic marker kit for Fusarium wilt and sterility mosaic diseases resistance in pigeonpea.
• A genomics and multi-platform metabolomics approach to identify new traits of rice quality in traditional and improved varieties
• A high density GBS map of bread wheat and its application for dissecting complex disease resistance traits.
• A new Multi Locus Variable Number of Tandem Repeat Analysis Scheme for epidemiological surveillance of Xanthomonas vasicola pv. musacearum, the plant pathogen causing bacterial wilt on banana and enset.
• A platform for efficient genotyping in Musa using microsatellite markers
• A reference microsatellite kit to assess for genetic diversity of Sorghum bicolor (Poaceae).
• A sorghum Practical Haplotype Graph facilitates genome-wide imputation and cost-effective genomic prediction
• A sorghum practical haplotype graph facilitates genome-wide imputation and cost-effective genomic prediction.
• A whole genome DArT assay to assess germplasm collection diversity in common beans
• AFLP-based molecular characterization of an elite germplasm collection of Jatropha curcas L., a biofuel plant.
• Adapting Genotyping-by-Sequencing for Rice F2 Populations.
• Adapting genotyping-by-sequencing for rice F2 populations.
• Advanced Genomics and Breeding Tools to Accelerate the Development of Climate Resilient Wheat
• Advances in Lentil Genomics
• Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies
• An EST-derived SNP and SSR genetic linkage map of cassava ( Manihot esculenta Crantz)
• An Integrated SNP Mining and Utilization (ISMU) pipeline for next generation sequencing data
• An efficient and cost-effective approach for genic microsatellite marker-based large-scale trait association mapping: identification of candidate genes for seed weight in chickpea
• An improved 7K SNP array, the C7AIR, provides a wealth of validated SNP markers for rice breeding and genetics studies.
• An imputation platform to enhance integration of rice genetic resources.
• An integrated framework for discovery and genotyping of genomic variants from high-throughput sequencing experiments
• Analyses of African common bean ( Phaseolus vulgaris L.) germplasm using a SNP fingerprinting platform: diversity, quality control and molecular breeding
• Analysis of Population Structure and Genetic Diversity in Rice Germplasm Using SSR Markers: An Initiative Towards Association Mapping of Agronomic Traits in Oryza Sativa
• Angiotensin II type 1 receptor A1166C gene polymorphism and essential hypertension in Calabar and Uyo cities, Nigeria.
• Applications of genotyping-by-sequencing (GBS) in maize genetics and breeding.
• Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise.
• Assembly of whole-chromosome pseudomolecules for polyploid plant genomes using outbred mapping populations.
• Assessment of genotypic variation among cultivated durum wheat based on EST-SSRS and genomic SSRS
• Association Mapping of Genetic Resources: Achievements and Future Perspectives
• Association mapping of height and maturity across five environments using the sorghum mini core collection.
• Associations between Common Variants in Iron-Related Genes with Haematological Traits in Populations of African Ancestry.
• Benchmarking Database Systems for Genomic Selection Implementation
• Benchmarking database systems for Genomic Selection implementation.
• Bioinformatic analysis of genotype by sequencing (GBS) data with NGSEP.
• Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations.
• Bulk segregant analysis: “An effective approach for mapping consistent-effect drought grain yield QTLs in rice”
• Characterization and mapping of Dt1 locus which co-segregates with CcTFL1 for growth habit in pigeonpea
• Collection of new diversity of wild and cultivated bananas ( Musa spp.) in the Autonomous Region of Bougainville, Papua New Guinea
• Combination of multiple microsatellite data sets to investigate genetic diversity and admixture of domestic cattle.
• Comparative assessment of EST-SSR, EST-SNP and AFLP markers for evaluation of genetic diversity and conservation of genetic resources using wild, cultivated and elite barleys
• Comparison of Kompetitive Allele Specific PCR (KASP) and genotyping by sequencing (GBS) for quality control analysis in maize
• Comparison of phenotypic versus marker-assisted background selection for the SUB1 QTL during backcrossing in rice
• Comparisons of sampling methods for assessing intra- and inter-accession genetic diversity in three rice species using genotyping by sequencing
• Compilation of an informative microsatellite set for genetic characterisation of East African finger millet (Eleusine coracana)
• Construction of a versatile SNP array for pyramiding useful genes of rice.
• Construction of new EST-SSRs for Fusarium resistant wheat breeding
• Crop Breeding Chips and Genotyping Platforms: Progress, Challenges, and Perspectives
• Cross-genera amplification of informative microsatellite markers from common bean and lentil for the assessment of genetic diversity in pigeonpea
• Cryptosporidium species detected in calves and cattle in Dagoretti, Nairobi, Kenya.
• DArT for high-throughput genotyping of Cassava (Manihot esculenta) and its wild relatives.
• De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology.
• Deciphering Genetics Underlying Stable Anaerobic Germination in Rice: Phenotyping, QTL Identification, and Interaction Analysis.
• Deciphering Genomic Regions for High Grain Iron and Zinc Content Using Association Mapping in Pearl Millet.
• Deciphering the Genetic Architecture of Cooked Rice Texture.
• Deep Assessment of Genomic Diversity in Cassava for Herbicide Tolerance and Starch Biosynthesis.
• Detection of African swine fever virus in the tissues of asymptomatic pigs in smallholder farming systems along the Kenya-Uganda border: implications for transmission in endemic areas and ASF surveillance in East Africa.
• Development and Application of High-Density Axiom Cajanus SNP Array with 56K SNPs to Understand the Genome Architecture of Released Cultivars and Founder Genotypes
• Development and Evaluation of a High Density Genotyping 'Axiom_Arachis' Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut.
• Development and deployment of a high-density linkage map identified quantitative trait loci for plant height in peanut (Arachis hypogaea L.)
• Development and evaluation of a high-throughput, low-cost genotyping platform based on oligonucleotide microarrays in rice
• Development and evaluation of high-density Axiom®CicerSNP Array for high-resolution genetic mapping and breeding applications in chickpea
• Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine
• Development and validation of KASP assays for genes underpinning key economic traits in bread wheat.
• Development and validation of allele-specific SNP/indel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L.
• Development of a SNP genotyping panel for detecting polymorphisms in Oryza glaberrima / O . sativa interspecific crosses
• Development of a seed DNA-based genotyping system for marker-assisted selection in maize
• Development of an STS marker tightly linked to Yr26 against wheat stripe rust using the resistance gene-analog polymorphism (RGAP) technique
• Development of multiple SNP marker panels affordable to breeders through genotyping by target sequencing (GBTS) in maize
• Development of multiplex-PCR systems for genes related to flour colour in Chinese autumn-sown wheat cultivars
• Development of nuclear, chloroplast and mitochondrial SNP markers for Khaya sp.
• Development of simple sequence repeat markers in the halophytic turf grass Sporobolus virginicus and transferable genotyping across multiple grass genera/species/genotypes.
• Development of species diagnostic SNP markers for quality control genotyping in four rice (Oryza L.) species.
• Discovery of genomic regions and candidate genes controlling shelling percentage using QTL-seq approach in cultivated peanut (Arachis hypogaea L.).
• Diversity maintenance and use of Vicia faba L. genetic resources
• Domestic animals infected with Mycobacterium ulcerans-Implications for transmission to humans.
• EST versus Genomic Derived Microsatellite Markers for Genotyping Wild and Cultivated Barley
• EcoTILLING-Based Association Mapping Efficiently Delineates Functionally Relevant Natural Allelic Variants of Candidate Genes Governing Agronomic Traits in Chickpea.
• Effect of Co-segregating Markers on High-Density Genetic Maps and Prediction of Map Expansion Using Machine Learning Algorithms.
• Effect of population size on the estimation of QTL: a test using resistance to barley stripe rust.
• Efficiency of selective genotyping for genetic analysis of complex traits and potential applications in crop improvement
• Emerging Genomic Tools for Legume Breeding: Current Status and Future Prospects
• Employing genome-wide SNP discovery and genotyping strategy to extrapolate the natural allelic diversity and domestication patterns in chickpea.
• Enhanced discrimination of African swine fever virus isolates through nucleotide sequencing of the p54, p72, and pB602L (CVR) genes
• Enhancing Hybrid Prediction in Pearl Millet Using Genomic and/or Multi-Environment Phenotypic Information of Inbreds.
• Estimating contemporary migration rates : effect and joint inference of inbreeding, null alleles and mistyping
• Evaluation of SSR and SNP Markers for Molecular Breeding in Rice
• Evaluation of genomic selection training population designs and genotyping strategies in plant breeding programs using simulation
• Evidence for genomic imprinting of the major QTL controlling susceptibility to trypanosomiasis in mice.
• Excised radicle tips as a source of genomic DNA for PCR-based genotyping and melting curve analysis in cotton
• Exploiting intra-cultivar variation to select for Barley yellow dwarf virus-PAV (BYDV-PAV) resistance in barley
• Exploiting the Genomic Diversity of Rice (Oryza sativa L.): SNP-Typing in 11 Early-Backcross Introgression-Breeding Populations
• Extending long-range phasing and haplotype library imputation methods to impute genotypes on sex chromosomes.
• Factors Affecting the Accuracy of Genotype Imputation in Populations from Several Maize Breeding Programs
• Fine mapping and gene cloning in the post-NGS era: advances and prospects
• Fine-Mapping of Sorghum Stay-Green QTL on Chromosome10 Revealed Genes Associated with Delayed Senescence.
• First insights into the transcriptome and development of new genomic tools of a widespread circum-Mediterranean tree species, Pinus halepensis Mill
• Flexible and scalable genotyping-by-sequencing strategies for population studies
• From markers to genome-based breeding in wheat.
• Future Prospects for Chickpea Research
• Future Prospects for Peanut Improvement
• Gas Chromatography-Mass Spectrometry and Single Nucleotide Polymorphism-Genotype-By-Sequencing Analyses Reveal the Bean Chemical Profiles and Relatedness of Coffea canephora Genotypes in Nigeria
• Gene-Based Marker Systems in Plants: High Throughput Approaches for Marker Discovery and Genotyping
• Gene-based microsatellites for cassava (Manihot esculenta Crantz): prevalence, polymorphisms, and cross-taxa utility
• Genetic Dissection and Identification of Candidate Genes for Salinity Tolerance Using Axiom®CicerSNP Array in Chickpea.
• Genetic Diversity and Population Structure of Brachiaria Species and Breeding Populations
• Genetic differentiation in Pyrenophora teres f. teres populations from Syria and Tunisia as assessed by AFLP markers
• Genetic diversity analysis of Pakistan rice (Oryza sativa) germplasm using multiplexed single nucleotide polymorphism markers
• Genetic diversity and population structure of enset (Ensete ventricosum Welw Cheesman) landraces of Gurage zone, Ethiopia
• Genetic diversity of 10 indigenous chicken ecotypes from Southern Highlands of Tanzania based on Major Histocompatibility Complex-linked microsatellite LEI0258 marker typing.
• Genetic diversity of tropical maize inbred lines combining resistance to Striga hermonthica with drought tolerance using SNP markers
• Genetics for low correlation between Fusarium head blight disease and deoxynivalenol (DON) content in a bread wheat mapping population.
• Genetics of Fe, Zn, β-carotene, GPC and yield traits in bread wheat ( Triticum aestivum L.) using multi-locus and multi-traits GWAS
• Genome-Wide Association Mapping in a Rice MAGIC Plus Population Detects QTLs and Genes Useful for Biofortification.
• Genome-Wide Association Studies and Genomic Selection in Pearl Millet: Advances and Prospects
• Genome-enabled prediction models for yield related traits in chickpea
• Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut
• Genome-wide generation and genotyping of informative SNPs to scan molecular signatures for seed yield in chickpea.
• Genome-wide genetic diversity, population structure and admixture analysis in African and Asian cattle breeds.
• Genome-wide insertion-deletion (InDel) marker discovery and genotyping for genomics-assisted breeding applications in chickpea
• Genome-wide linkage disequilibrium analysis of indigenous cattle breeds of Ethiopia and Korea using different SNP genotyping BeadChips
• Genomewide Association Studies for 50 Agronomic Traits in Peanut Using the ‘Reference Set’ Comprising 300 Genotypes from 48 Countries of the Semi-Arid Tropics of the World
• Genomic Selection and Use of Molecular Tools in Breeding Programs for Indigenous and Crossbred Cattle in Developing Countries: Current Status and Future Prospects
• Genomic Selection for Crop Improvement: An Introduction
• Genomic Selection in Wheat Breeding using Genotyping-by-Sequencing
• Genomic footprints of dryland stress adaptation in Egyptian fat-tail sheep and their divergence from East African and western Asia cohorts.
• Genomic prediction across years in a maize doubled haploid breeding program to accelerate early-stage testcross testing
• Genomic-enabled prediction models using multi-environment trials to estimate the effect of genotype × environment interaction on prediction accuracy in chickpea
• Genomics of gene banks: A case study in rice
• Genotypic Characterization of the U.S. Peanut Core Collection.
• Genotypic characterization of the U.S. peanut core collection
• Genotyping SSR length variants by isothermal DNA amplification
• Genotyping for Blast (Pyricularia oryzae) Resistance Genes in F2 Population of Supa Aromatic Rice (Oryza sativa L.).
• Genotyping of Theileria lestoquardi from sheep and goats in Sudan to support control of Malignant Ovine Theileriosis.
• Genotyping of whole genome amplified reduced representation libraries reveals a cryptic population of Culicoides brevitarsis in the Northern Territory, Australia
• Genotyping-by-sequencing of three mapping populations for identification of candidate genomic regions for resistance to sterility mosaic disease in pigeonpea
• Geographic and Research Center Origins of Rice Resistance to Asian Planthoppers and Leafhoppers: Implications for Rice Breeding and Gene Deployment.
• Grain yield QTLs with consistent-effect under reproductive-stage drought stress in rice
• Groundnut improvement: use of genetic and genomic tools
• HRM technology for the identification and characterization of INDEL and SNPs mutations in genes involved in drought and salt tolerance of durum wheat
• Haplotype analysis of molecular markers linked to stem rust resistance genes in Ethiopian improved durum wheat varieties and tetraploid wheat landraces
• High-Throughput SNP Genotyping to Accelerate Crop Improvement
• High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus
• High-throughput estimation of crop traits: A review of ground and aerial phenotyping platforms
• High-throughput single nucleotide polymorphism genotyping for breeding applications in rice using the BeadXpress platform
• Identification and validation of single nucleotide polymorphic markers linked to Ug99 stem rust resistance in spring wheat
• Identification of a new resistance gene Pi - Da(t) from Dacca6 against rice blast fungus ( Magnaporthe oryzae ) in Jin23B background
• Identification of candidate genes for dissecting complex branch number trait in chickpea.
• Identification of genomic region(s) responsible for high iron and zinc content in rice.
• Identifying Transcription Factor Genes Associated with Yield Traits in Chickpea
• Imputation of Single Nucleotide Polymorphism Genotypes in Biparental, Backcross, and Topcross Populations with a Hidden Markov Model
• InDel markers: An extended marker resource for molecular breeding in chickpea
• Incursion of a new aggressive Puccinia striiformis f.sp. tritici race in Syria and Lebanon in 2010-2011
• Individual growth monitoring of European sea bass larvae by image analysis and microsatellite genotyping
• Isolation of EST-derived microsatellite markers for genotyping the A and B genomes of wheat.
• KASP Genotyping as a Molecular Tool for Diagnosis of Cassava-Colonizing Bemisia tabaci.
• KASPspoon: an in vitro and in silico PCR analysis tool for high-throughput SNP genotyping
• Laboratory Information Management Software for genotyping workflows: applications in high throughput crop genotyping
• Large-Scale Development of Cost-Effective Single-Nucleotide Polymorphism Marker Assays for Genetic Mapping in Pigeonpea and Comparative Mapping in Legumes
• Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes
• Leaf Tissue Sampling and DNA Extraction Protocols
• Linear Marker and Genome-Wide Selection Indices
• Low pathotype diversity in a recombinant Puccinia striiformis population through convergent selection at the eastern Himalayan centre of diversity (Nepal)
• MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data
• Managing and Discovering Agronomically Beneficial Traits in Chickpea Germplasm Collections
• Mapping QTL for heat tolerance at flowering stage in rice using SNP markers
• Mapping QTLs for submergence tolerance in rice using a population fixed for SUB1A tolerant allele
• Mapping for adult-plant resistance against Septoria tritici blotch in a common wheat line Murga.
• Mapping resistance to spot blotch in a CIMMYT synthetic-derived bread wheat
• Mapping the distribution of Anopheles funestus across Benin highlights a sharp contrast of susceptibility to insecticides and infection rate to Plasmodium between southern and northern populations
• Marker-Assisted Breeding for Improving the Cooking and Eating Quality of Rice
• Marker-Assisted Introgression of Quantitative Resistance Gene pi21 Confers Broad Spectrum Resistance to Rice Blast
• Marker-assisted sampling of the cultivated Andean potato Solanum phureja collection using RAPD markers
• Marker-assisted selection strategy to pyramid two or more QTLs for quantitative trait-grain yield under drought.
• Method Development of Near-Infrared Spectroscopy Approaches for Nondestructive and Rapid Estimation of Total Protein in Brown Rice Flour.
• Microsatellites in cassava (Manihot esculenta Crantz) : discovery, inheritance and variability
• Mining conifers' mega-genome using rapid and efficient multiplexed high-throughput genotyping-by-sequencing (GBS) SNP discovery platform
• Mining of Gene-Based SNPs from Publicly Available ESTs and Their Conversion to Cost-Effective Genotyping Assay in Sorghum (Sorghum bicolor (L.) Moench)
• Molecular Characterization of 87 Functional Genes in Wheat Diversity Panel and Their Association With Phenotypes Under Well-Watered and Water-Limited Conditions.
• Molecular Mapping of Oil Content and Fatty Acids Using Dense Genetic Maps in Groundnut (Arachis hypogaea L.)
• Molecular and Cytogenetic Characterization of Wild Musa Species.
• Molecular and Cytogenetic Study of East African Highland Banana
• Molecular and cytological characterization of the global Musa germplasm collection provides insights into the treasure of banana diversity
• Molecular breeding in plants: moving into the mainstream
• Molecular characterization of diverse CIMMYT maize inbred lines from eastern and southern Africa using single nucleotide polymorphic markers
• Molecular mapping and inheritance of restoration of fertility (Rf) in A4 hybrid system in pigeonpea (Cajanus cajan (L.) Millsp.)
• Molecular mapping of QTLs for yield related traits in recombinant inbred line (RIL) population derived from the popular rice hybrid KRH-2 and their validation through SNP genotyping.
• Molecular mapping of leaf rust resistance gene LrZH84 in Chinese wheat line Zhou 8425B.
• Molecular marker development and application for improving qualities in bread wheat
• Molecular markers for plant breeding: comparisons of RFLP and RAPD genotyping costs
• Molecular markers for tracking the origin and worldwide distribution of invasive strains of Puccinia striiformis
• Molecular profiling of Jatropha curcas L. collected from different geographical locations of India
• Molecular tagging of stripe rust resistance gene YrZH84 in Chinese wheat line Zhou 8425B.
• Multi-locus sequence typing of African swine fever viruses from endemic regions of Kenya and Eastern Uganda (2011–2013) reveals rapid B602L central variable region evolution
• Multilocus variable number tandem repeat analysis as a tool to discern genetic relationships among strains of Yersinia enterocolitica biovar 1A
• Multiple QTL mapping in autopolyploids: a random-effect model approach with application in a hexaploid sweetpotato full-sib population
• Multiplex-endonuclease genotyping approach (MEGA): a tool for the fine-scale detection of unlinked polymorphic DNA markers
• NGSEP3: accurate variant calling across species and sequencing protocols
• NOISYmputer: genotype imputation in bi-parental populations for noisy low-coverage next-generation sequencing data
• New QTL for resistance to Puccinia polysora Underw in maize.
• Next-generation sequencing based genotyping, cytometry and phenotyping for understanding diversity and evolution of guinea yams
• Novel SNP discovery in African buffalo, Syncerus caffer, using high-throughput sequencing
• Novel molecular marker-assisted strategy for production of wheat-Leymus mollis chromosome addition lines.
• Optimal Design of Preliminary Yield Trials with Genome-Wide Markers
• Optimizing sample size for molecular characterization of open-pollinated maize (Zea mays L.) varieties using simple sequence repeat markers
• Pathogenomic Analysis of Wheat Yellow Rust Lineages Detects Seasonal Variation and Host Specificity.
• Phenotypic and genome-wide association analysis of spike ethylene in diverse wheat genotypes under heat stress.
• Pigeonpea composite collection and identification of germplasm for use in crop improvement programmes
• Prevalence and genotyping of Echinococcus granulosus in sheep in Narok County, Kenya
• Prevalence and genotyping of Echinococcus granulosus sensu lato from livestock in north-eastern Kenya.
• QTL detection with bidirectional and unidirectional selective genotyping: marker-based and trait-based analyses
• QTL mapping for field resistance to wheat blast in the Caninde#1/Alondra population
• QTL mapping for tolerance of anaerobic germination from IR64 and the aus landrace Nanhi using SNP genotyping
• QTL mapping of pearl millet rust resistance using an integrated DArT- and SSR-based linkage map
• QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut (Arachis hypogaea L.).
• Quality control genotyping for assessment of genetic identity and purity in diverse tropical maize inbred lines.
• Quantitative Trait Loci Mapping for Spot Blotch Resistance in Two Biparental Mapping Populations of Bread Wheat.
• Rapid identification of bovine MHCI haplotypes in genetically divergent cattle populations using next-generation sequencing.
• Recent advances in molecular marker techniques: Insight into QTL mapping, GWAS and genomic selection in plants
• Resistance to Spot Blotch in Two Mapping Populations of Common Wheat Is Controlled by Multiple QTL of Minor Effects
• Revisiting the Hetero-Fertilization Phenomenon in Maize
• Rice Galaxy: an open resource for plant science
• Rice Galaxy: an open resource for plant science.
• Rice Molecular Breeding Laboratories in the Genomics Era: Current Status and Future Considerations
• Robust and inexpensive SSR markers analyses using LI-COR DNA analyzer.
• SNP genotyping: the KASP assay
• SNP markers for low molecular glutenin subunits (LMW-GSs) at the Glu-A3 and Glu-B3 loci in bread wheat.
• SNP‐based genotyping and whole‐genome sequencing reveal previously unknown genetic diversity in Xanthomonas vasicola pv. musacearum, causal agent of banana Xanthomonas wilt, in its presumed Ethiopian origin
• SSR analysis of introgression of drought tolerance from the genome of Hordeum spontaneum into cultivated barley ( Hordeum vulgare ssp vulgare)
• Seed protein content and its relationships with agronomic traits in pigeonpea is controlled by both main and epistatic effects QTLs.
• Selection of highly informative and user-friendly microsatellites (SSRs) for genotyping of cultivated potato.
• Sequence-Based Genotyping of Expressed Swine Leukocyte Antigen Class I Alleles by Next-Generation Sequencing Reveal Novel Swine Leukocyte Antigen Class I Haplotypes and Alleles in Belgian, Danish, and Kenyan Fattening Pigs and Göttingen Minipigs.
• Sequence-based genotyping of expressed SLA class I alleles by Next Generation Sequencing reveal novel SLA class I haplotypes and alleles in Belgian, Danish and Kenyan fattening pigs and Göttingen minipigs
• Sequencing Analysis of Genetic Loci for Resistance for Late Leaf Spot and Rust in Peanut (Arachis hypogaea L.).
• Short communication: Genomic selection in a crossbred cattle population using data from the Dairy Genetics East Africa Project
• Single Nucleotide Polymorphism Genotyping for Breeding and Genetics Applications in Chickpea and Pigeonpea using the BeadXpress Platform
• Single Nucleotide Polymorphism-based Genetic Diversity in the Reference Set of Peanut (Arachis spp.) by Developing and Applying Cost-Effective Kompetitive Allele Specific Polymerase Chain Reaction Genotyping Assays
• Single Nucleotide Polymorphisms in Common Bean: Their Discovery and Genotyping Using a Multiplex Detection System
• Single nucleotide polymorphism genotyping using Kompetitive Allele Specific PCR (KASP): overview of the technology and its application in crop improvement
• Strategies to optimize marker-assisted introgression of multiple unlinked QTL.
• Technical note: Development and application of KASP assays for rapid screening of 8 genetic defects in Holstein cattle.
• The Development of Quality Control Genotyping Approaches: A Case Study Using Elite Maize Lines.
• The feasibility of using low-density marker panels for genotype imputation and genomic prediction of crossbred dairy cattle of East Africa
• The major histocompatibility complex homozygous inbred Babraham pig as a resource for veterinary and translational medicine.
• The metabotyping of an East African cassava diversity panel: A core collection for developing biotic stress tolerance in cassava.
• Toward the sequence-based breeding in legumes in the post-genome sequencing era.
• Translational genomics for achieving higher genetic gains in groundnut.
• Trypanosoma brucei genomics and the challenge of identifying drug and vaccine targets
• UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study.
• Use of New Generation Single Nucleotide Polymorphism Genotyping for Rapid Development of Near-Isogenic Lines in Rice
• Variations for Fusarium head blight resistance associated with genomic diversity in different sources of the resistant wheat cultivar ‘Sumai 3’
• When less can be better: How can we make genomic selection more cost-effective and accurate in barley?
• Whole-genome genotyping of grape using a panel of microsatellite multiplex PCRs
• Whole-genome scanning for mapping determinacy in Pigeonpea (Cajanus spp.)
• Whole-genome strategies for marker-assisted plant breeding
• qDTY1.1, a major QTL for rice grain yield under reproductive-stage drought stress with a consistent effect in multiple elite genetic backgrounds
• rAmpSeq: Using repetitive sequences for robust genotyping