selected publications
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article
- An improved 7K SNP array, the C7AIR, provides a wealth of validated SNP markers for rice breeding and genetics studies.. PLOS ONE. 15. 2020
- Dissecting QTLs for Reproductive Stage Salinity Tolerance in Rice from BRRI dhan 47. Plant breeding and biotechnology. 7:302-312. 2019
- Assessing trait contribution and mapping novel QTL for salinity tolerance using the Bangladeshi rice landrace Capsule. Rice. 12:1-18. 2019
- 1k-RiCA (1K-Rice Custom Amplicon) a novel genotyping amplicon-based SNP assay for genetics and breeding applications in rice.. Rice. 12:55. 2019
- cis dominantly explains regulatory divergence between two indica rice genotypes; drought further enhances regulatory differences. bioRxiv. 714907. 2019
- Rice Galaxy: an open resource for plant science.. GigaScience. 8. 2019
- QTL mapping for tolerance to anaerobic germination in rice from IR64 and the aus landrace Kharsu 80A. Breeding Science. 69:227-233. 2019
- Rice Galaxy: an open resource for plant science. bioRxiv. 358754. 2018
- Large-scale deployment of a rice 6 K SNP array for genetics and breeding applications.. Rice. 10:1-13. 2017
- Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm.. Rice. 10:8-8. 2017
- Mapping QTLs for submergence tolerance in rice using a population fixed for SUB1A tolerant allele. Molecular Breeding. 37:47. 2017
- Characterization of indica–japonica subspecies-specific InDel loci in wild relatives of rice (Oryza sativa L. subsp. indica Kato and subsp. japonica Kato). Genetic Resources and Crop Evolution. 64:405-418. 2017
- Genetic Control of Plasticity in Root Morphology and Anatomy of Rice in Response to Water Deficit.. Plant Physiology. 174:2302-2315. 2017
- Development of salt tolerant IR64 near isogenic lines through marker-assisted breeding. Journal of Crop Science and Biotechnology. 19:373-381. 2016
- Genetic diversity analysis of Pakistan rice (Oryza sativa) germplasm using multiplexed single nucleotide polymorphism markers. Genetic Resources and Crop Evolution. 63:1113-1126. 2016
- Analysis of Allelic Imbalance in Rice Hybrids Under Water Stress and Association of Asymmetrically Expressed Genes with Drought-Response QTLs.. Rice. 9:50-50. 2016
- Exploring novel genetic sources of salinity tolerance in rice through molecular and physiological characterization. Annals of Botany. 117:1083-1097. 2016
- Development of a SNP genotyping panel for detecting polymorphisms in Oryza glaberrima / O . sativa interspecific crosses. Euphytica. 201:67-78. 2015
- Fine mapping of a grain weight quantitative trait locus, qGW6, using near isogenic lines derived from Oryza rufipogon IRGC105491 and Oryza sativa cultivar MR219.. Genetics and Molecular Research. 13:9477-9488. 2014
- High-Throughput SNP Genotyping to Accelerate Crop Improvement. Plant breeding and biotechnology. 2:195-212. 2014
- Application of indica - japonica single- nucleotide polymorphism markers for diversity analysis of Oryza AA genome species. PLANT GENETIC RESOURCES-CHARACTERIZATION AND UTILIZATION. 12:S36-S40. 2014
- Meta-analysis of quantitative trait loci for grain yield and component traits under reproductive-stage drought stress in an upland rice population. Molecular Breeding. 34:283-295. 2014
- QTL mapping for tolerance of anaerobic germination from IR64 and the aus landrace Nanhi using SNP genotyping. Euphytica. 197:251-260. 2014
- Multi-parent advanced generation inter-cross (MAGIC) populations in rice: progress and potential for genetics research and breeding. Rice. 6:11-11. 2013
- Genomics Applications to Salinity Tolerance Breeding in Rice 2013
- High-throughput single nucleotide polymorphism genotyping for breeding applications in rice using the BeadXpress platform. Molecular Breeding. 29:875-886. 2012
- Mapping QTL for heat tolerance at flowering stage in rice using SNP markers. Plant Breeding. 131:33-41. 2012
- Identification and Validation of Quantitative Trait Loci for Agronomic Traits in Advanced Backcross Breeding Lines Derived from Oryza rufipogon × Oryza sativa Cultivar MR219. Plant Molecular Biology Reporter. 30:929-939. 2012
- Carbon isotope discrimination and salinity tolerance in rice 2012
- Investigation of seedling-stage salinity tolerance QTLs using backcross lines derived from Oryza sativa L. Pokkali. Plant Breeding. 130:430-437. 2011
- Molecular Breeding of Rice for Problem Soils 2011
- Development of a Research Platform for Dissecting Phenotype–Genotype Associations in Rice ( Oryza spp.). Rice. 3:205-217. 2010
- Characterizing the Saltol Quantitative Trait Locus for Salinity Tolerance in Rice. Rice. 3:148-160. 2010
- Response to zinc deficiency of two rice lines with contrasting tolerance is determined by root growth maintenance and organic acid exudation rates, and not by zinc-transporter activity.. New Phytologist. 186:400-414. 2010
- Marker Assisted Breeding 2010
- Genetic Diversity of Isolated Populations of Indonesian Landraces of Rice (Oryza sativa L.) Collected in East Kalimantan on the Island of Borneo. Rice. 2:80-92. 2009
- Through the genetic bottleneck: O. rufipogon as a source of trait-enhancing alleles for O. sativa. Euphytica. 154:317-339. 2007
- Genetic diversity analysis of traditional and improved Indonesian rice (Oryza sativa L.) germplasm using microsatellite markers.. Theoretical and Applied Genetics. 114:559-568. 2007
- Global Dissemination of a Single Mutation Conferring White Pericarp in Rice. PLOS Genetics. 3:1418-1424. 2007
- Association of a Lipoxygenase Locus, Lpx‐B1, with Variation in Lipoxygenase Activity in Durum Wheat Seeds. Crop Science. 42:1695-1700. 2002
- Association of lypoxygenase locus, lpx-b1with variation in lipoxygenase activity in durum wheat seeds 2002
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dataset
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document
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editorial article
- Molecular breeding in plants: moving into the mainstream. Molecular Breeding. 29:831-832. 2012
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hide from search
- Development of genome-wide SNP assays for rice. Breeding Science. 524-535. 2010
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review
- Genetic Advances in Adapting Rice to a Rapidly Changing Climate. Journal of Agronomy and Crop Science. 360-373. 2012
- Genetic and genomic approaches to develop rice germplasm for problem soils.. Plant Molecular Biology. 547-570. 2007