selected publications
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article
- Drought response QTLs in a Super Basmati x Azucena population by high-density GBS-based SNP linkage mapping. Plant Breeding. 2021
- Enriched-GWAS and Transcriptome Analysis to Refine and Characterize a Major QTL for Anaerobic Germination Tolerance in Rice. International Journal of Molecular Sciences. 22. 2021
- Genetic Mapping by Sequencing More Precisely Detects Loci Responsible for Anaerobic Germination Tolerance in Rice. PLANTS-BASEL. 10. 2021
- Comparative Transcriptomics and Co-Expression Networks Reveal Tissue- and Genotype-Specific Responses of qDTYs to Reproductive-Stage Drought Stress in Rice (Oryza sativa L.).. Genes. 11:1124. 2020
- An improved 7K SNP array, the C7AIR, provides a wealth of validated SNP markers for rice breeding and genetics studies.. PLOS ONE. 15. 2020
- Variation in seed longevity among diverse Indica rice varieties.. Annals of Botany. 124:447-460. 2019
- Predicting agronomic traits and associated genomic regions in diverse rice landraces using marker stability. bioRxiv. 805002. 2019
- 1k-RiCA (1K-Rice Custom Amplicon) a novel genotyping amplicon-based SNP assay for genetics and breeding applications in rice.. Rice. 12:55. 2019
- Rice Galaxy: an open resource for plant science.. GigaScience. 8. 2019
- Exploring the genetic diversity within traditional Philippine pigmented Rice. Rice. 12:27-27. 2019
- Methodology: ssb-MASS: a single seed-based sampling strategy for marker-assisted selection in rice.. Plant Methods. 15:1-11. 2019
- Genome-wide association and gene validation studies for early root vigour to improve direct seeding of rice.. Plant Cell and Environment. 41:2731-2743. 2018
- DNA fingerprinting at farm level maps rice biodiversity across Bangladesh and reveals regional varietal preferences.. Scientific Reports. 8:14920. 2018
- Transcriptional response of rice flag leaves to restricted external phosphorus supply during grain filling in rice cv. IR64.. PLOS ONE. 13:1-19. 2018
- Association mapping in rice: basic concepts and perspectives for molecular breeding. Plant Production Science. 21:159-176. 2018
- Rice Galaxy: an open resource for plant science. bioRxiv. 358754. 2018
- The GOBII Project: Transforming Breeding through Genomic Data Management and Decision Support 2018
- IRRI's Pipeline for Integrating Genotype and Phenotype Data for Enhanced Product Development 2018
- Prospects for Genetic Improvement in Internal Nitrogen Use Efficiency in Rice. AGRONOMY-BASEL. 7:70-82. 2017
- Large-scale deployment of a rice 6 K SNP array for genetics and breeding applications.. Rice. 10:1-13. 2017
- Crop-model assisted phenomics and genome-wide association study for climate adaptation of indica rice. 1. Phenology.. Journal of Experimental Botany. 68:4369-4388. 2017
- Crop-model assisted phenomics and genome-wide association study for climate adaptation of indica rice. 2. Thermal stress and spikelet sterility. Journal of Experimental Botany. 68:4389-4406. 2017
- Can natural variation in grain P concentrations be exploited in rice breeding to lower fertilizer requirements. PLOS ONE. 12. 2017
- Genetic dissection for zinc deficiency tolerance in rice using bi-parental mapping and association analysis. Theoretical and Applied Genetics. 130:1903-1914. 2017
- CRISPR-Cas9 and CRISPR-Cpf1 mediated targeting of a stomatal developmental gene EPFL9 in rice. Plant Cell Reports. 36:745-757. 2017
- Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm.. Rice. 10:8-8. 2017
- Phosphorus remobilization from rice flag leaves during grain filling: an RNA-seq study. Plant Biotechnology Journal. 15:15-26. 2017
- rAmpSeq: Using repetitive sequences for robust genotyping. bioRxiv. 96628. 2016
- Petunia hybrida PDR2 is Involved in Herbivore Defense by Controlling Steroidal Contents in Trichomes.. Plant Cell and Environment. 39:2725-2739. 2016
- Phosphorus uptake, partitioning and redistribution during grain filling in rice. Annals of Botany. 118:1151-1162. 2016
- From promise to application: root traits for enhanced nutrient capture in rice breeding. Journal of Experimental Botany. 67:3605-3615. 2016
- The knowns and unknowns of phosphorus loading into grains, and implications for phosphorus efficiency in cropping systems. Journal of Experimental Botany. 67:1221-1229. 2016
- Phosphorus Deficiency Alters Nutrient Accumulation Patterns and Grain Nutritional Quality in Rice. AGRONOMY-BASEL. 6. 2016
- A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice.. Nature plants. 1:15124-15124. 2015
- Unmasking Novel Loci for Internal Phosphorus Utilization Efficiency in Rice Germplasm through Genome-Wide Association Analysis. PLOS ONE. 10. 2015
- Anaerobic germination-tolerant plants and related materials and methods 2014
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- The importance of strigolactone transport regulation for symbiotic signaling and shoot branching.. Planta. 1351-1360. 2016
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review
- The Genetic Basis and Nutritional Benefits of Pigmented Rice Grain.. Frontiers in Genetics. 229. 2020