snp Concept

• Show top organizations collaborating in this research area

•  
• Overview
•  

Overview

research area of

• Badoni, Saurabh, IRRI, IRRI
• Badu-Apraku, Baffour, Maize Breeder, IITA, IITA
• Bartholome, Jerome, Scientist, IRRI, IRRI
• Baum, Michael, BCI Program and Morocco Platform Director, ICARDA, ICARDA
• Benzie, John, Research Program Leader - Sustainable Aquaculture, WORLDFISH, WorldFish
• BEYENE, Yoseph, Regional Maize Breeding Coordinator - Africa & Maize Breeder - Eastern Africa, CIMMYT, CIMMYT
• BURGUEÑO FERREIRA, Juan Andres, Senior Biometrician / Head of BSU, CIMMYT, CIMMYT
• Chebotarov, Dmytro, Scientist, Computational Genetics, IRRI, IRRI
• Dela Paz, Madonna, Assistant Scientist, IRRI, IRRI
• DREISIGACKER, Susanne, Wheat Molecular Breeding, CIMMYT, CIMMYT
• Ferguson, Morag, Scientist, IITA, ICARDA
• Hamwieh, Aladdin, Breeder, Biotechnologist and Egypt Country Manager, ICARDA, ICARDA
• Hanotte, Olivier, Principal Scientist - Quantitative Geneticist, ILRI, ILRI
• HE, Zhonghu, Wheat Breeder, CCR, CIMMYT, CIMMYT
• Hechanova, Sherry Lou, Assistant Scientist, IRRI, IRRI
• Ismail, Abdelbagi, Regional Representative, Africa, CESD, ILRI
• Jianlin, Han, Senior Scientist - Population Geneticist, ILRI, ILRI
• Khan, Aamir, Research Associate, ICRISAT, ICRISAT
• Kumar, Arvind, Senior Scientist, IRRI, ICRISAT
• Legg, James, Plant Health Specialist, IITA, The Alliance of Bioversity and CIAT
• MAGOROKOSHO, Cosmos, Maize Breeder - Southern Africa & CCR, CIMMYT, CIMMYT
• Mahendar, Thudi, Senior Scientist, ICRISAT, CIMMYT
• MAKUMBI, Dan, Maize Breeder - Eastern Africa, CIMMYT, CIMMYT
• Mansueto, Locedie, CONSULTANT, IRRI, IRRI
• McNally, Kenneth, Senior Scientist II, IRRI, IRRI
• Mrode, Raphael, Principal Scientist - Quantitative Geneticist in Dairy, ILRI, ILRI
• Mwacharo, Joram, ICARDA, ICARDA
• OGUGO, Veronica, Hosted Staff - C4 Research Associate, CIMMYT, CIMMYT
• OLSEN, Michael Scott, Molecular Breeding and Trait Pipeline Coordinator, CIMMYT, CIMMYT
• PEREZ RODRIGUEZ, Paulino, Consultant, CIMMYT, CIMMYT
• Pradeep, Ruperao, Consultant, ICRISAT, ICRISAT
• RASHEED, Awais, Adjunct-Associate Scientist, CIMMYT, CIMMYT
• Rathore, Abhishek, Theme Leader & Principal Scientist, ICRISAT, ICRISAT
• Saxena, Rachit, Scientist (Applied Genomics), ICRISAT, CIMMYT
• Shah, Trushar, Integrated Breeding Platform (IBP) Hub Manager, IITA, CIMMYT
• Singh, Vikas, Regional Breeding Lead & Co-Ordinator, ICRISAT, ICRISAT
• Tadesse, Wuletaw, Principal Scientist - Spring Bread Wheat Breeder, ICARDA, CIMMYT
• Upadhyaya, HD, ICRISAT, ICRISAT
• Vanika, Garg, Research Scholar, ICRISAT, ICRISAT
• WEGARY, Dagne, Maize Breeder – Southern Africa, CIMMYT, CIMMYT
• Wosula, Everlyne, Postdoctoral Fellow - Vector Entomologist, IITA, IITA
• XU, Yunbi, Maize Molecular Breeder - Asia, CIMMYT, CIMMYT
• ZHANG, Xuecai, Maize Molecular Breeder - Latin America, CIMMYT, CIMMYT

subject area of

• A Genome-Wide Association Study Identifies SNP Markers for Virulence in Magnaporthe oryzae Isolates from Sub-Saharan Africa
• A Genome-Wide Association Study Reveals a Rich Genetic Architecture of Flour Color-Related Traits in Bread Wheat.
• A High-Density Consensus Map of Common Wheat Integrating Four Mapping Populations Scanned by the 90K SNP Array.
• A SNP marker for the selection of HfrDrd , a Hessian fly-response gene in wheat
• A sorghum practical haplotype graph facilitates genome-wide imputation and cost-effective genomic prediction.
• Accounting for epistasis improves genomic prediction of phenotypes with univariate and bivariate models across environments
• An EST-derived SNP and SSR genetic linkage map of cassava ( Manihot esculenta Crantz)
• An improved 7K SNP array, the C7AIR, provides a wealth of validated SNP markers for rice breeding and genetics studies.
• Analysis of the allelic variation in the Shell gene homolog of E. oleifera and design of species specific Shell primers
• Association of Copy Number Variation at Intron 3 of HMGA2 With Navel Length in Bos indicus
• CEL I Nuclease Digestion for SNP Discovery and Marker Development in Common Bean ( Phaseolus vulgaris L.)
• Characterization of Donor Genome segments of BC[2] and BC[4] way rarem x oryzica Llanos-5 progenies detected by SNP markers
• CicArVarDB: SNP and InDel database for advancing genetics research and breeding applications in chickpea
• Combined study on genetic diversity of wheat genotypes using SNP marker and phenotypic reaction to Heterodera filipjevi
• Comparative LD mapping using single SNPs and haplotypes identifies QTL for plant height and biomass as secondary traits of drought tolerance in maize
• Comparative assessment of EST-SSR, EST-SNP and AFLP markers for evaluation of genetic diversity and conservation of genetic resources using wild, cultivated and elite barleys
• Comparison of SNP variation and distribution in indigenous ethiopian and korean cattle (hanwoo) populations.
• Construction of a genetic map for pearl millet, Pennisetum glaucum (L.) R. Br., using a genotyping-by-sequencing (GBS) approach
• Construction of a versatile SNP array for pyramiding useful genes of rice.
• Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome.
• De novo assembly of English yew (Taxus baccata) transcriptome and its applications for intra- and inter-specific analyses.
• Degeneration of aflatoxin gene clusters in Aspergillus flavus from Africa and North America
• Deploying QTL-seq for rapid delineation of a potential candidate gene underlying major trait-associated QTL in chickpea
• Detection of genetic integrity of conserved maize (Zea mays L.) germplasm in genebanks using SNP markers
• Development and Validation of an Open Access SNP Array for Nile Tilapia (Oreochromis niloticus).
• Development and validation of KASP assays for genes underpinning key economic traits in bread wheat.
• Development and validation of SNP-based functional codominant markers for two major disease resistance genes in rice (O. sativa L.)
• Development of Allele Specific SNP Marker for RTSV Resistance Gene at the tsv1 Locus
• Development of Diversity Arrays Technology markers as a tool for rapid genomic assessment in Nile tilapia, Oreochromis niloticus.
• Development of SNP assays for hessian fly response genes, Hfr-1 and Hfr-2 , for marker-assisted selection in wheat breeding
• Development of a SNP genotyping panel for detecting polymorphisms in Oryza glaberrima / O . sativa interspecific crosses
• Development of a SNP marker assay for the Lr67 gene of wheat using a genotyping by sequencing approach
• Development of diagnostic SNP markers for quality assurance and control in sweetpotato [Ipomoea batatas (L.) Lam.] breeding programs
• Development of genome-wide SNP assays for rice
• Development of multiple SNP marker panels affordable to breeders through genotyping by target sequencing (GBTS) in maize
• Development of nuclear, chloroplast and mitochondrial SNP markers for Khaya sp.
• Dissecting tocopherols content in maize (Zea mays L.), using two segregating populations and high-density single nucleotide polymorphism markers
• Dissection of QTL linked to grain yield and identification of candidate genes involved in grain yield formation using comparative SNP sequences analysis
• Exploiting the Genomic Diversity of Rice (Oryza sativa L.): SNP-Typing in 11 Early-Backcross Introgression-Breeding Populations
• Exploring genetic diversity of rice cultivars for the presence of brown planthopper (BPH) resistance genes and development of SNP marker for Bph18
• Future Prospects of Molecular Markers in Plants
• GWAS Approach to Find SNPs Associated with Salt Exclusion in Leaf Sheath of Rice
• Genetic Diversity of Tropical Hybrid Rice Germplasm Measured by Molecular Markers
• Genetic Gains in Grain Yield Through Genomic Selection in Eight Bi-parental Maize Populations under Drought Stress
• Genetic and transcriptional variations in NRAMP - 2 and OPAQUE1 genes are associated with salt stress response in wheat
• Genetic diversity and population structure of early-maturing tropical maize inbred lines using SNP markers.
• Genetic diversity and structure of indica rice varieties from two heterotic pools of southern China and IRRI
• Genetic diversity, SNP-trait associations and genomic selection accuracy in a west African collection of Kersting's groundnut [Macrotyloma geocarpum(Harms) Maréchal & Baudet].
• Genetic variation and population structure of maize inbred lines adapted to the mid-altitude sub-humid maize agro-ecology of Ethiopia using single nucleotide polymorphic (SNP) markers
• Genome-Wide Association Study of Grain Size Traits in Indica Rice Multiparent Advanced Generation Intercross (MAGIC) Population.
• Genome-Wide QTL Mapping for Wheat Processing Quality Parameters in a Gaocheng 8901/Zhoumai 16 Recombinant Inbred Line Population.
• Genome-Wide Variation, Candidate Regions and Genes Associated With Fat Deposition and Tail Morphology in Ethiopian Indigenous Sheep
• Genome-wide association analysis of stem water-soluble carbohydrate content in bread wheat.
• Genome-wide association for grain yield under rainfed conditions in historical wheat cultivars from Pakistan.
• Genome-wide association mapping of spot blotch resistance in wheat association mapping initiative (WAMI) panel of spring wheat (Triticum aestivum L.).
• Genome-wide association mapping of vitamins B1 and B2 in common wheat
• Genome-wide association study and genomic prediction of Fusarium ear rot resistance in tropical maize germplasm
• Genome-wide detection of markers associated with early leaf spot and pod weight in groundnut using SNP and DArT markers
• Genome-wide transcriptome and physiological analyses provide new insights into peanut drought response mechanisms.
• Genome‐wide association study for spot blotch resistance in Afghan wheat germplasm
• Genomic Prediction in Maize Breeding Populations with Genotyping-by-Sequencing
• Genomic analysis identified a potential novel molecular mechanism for high-altitude adaptation in sheep at the Himalayas.
• Genomic prediction of the general combining ability of maize lines (Zea mays L.) and the performance of their single crosses
• Genotyping-by-sequencing and multilocation evaluation of two interspecific backcross populations identify QTLs for yield-related traits in pigeonpea.
• Haplotype variation and phylogeography of Rhizoctonia solani AG1-IA strains based on rDNA5.8S-ITS and ß-actin gene sequence analyses
• High-Throughput SNP Genotyping to Accelerate Crop Improvement
• High-throughput SNP genotyping with the GoldenGate assay in maize
• Identificación de QTL de resistencia a la bacteriosis vascular en yuca bajo condiciones naturales de infección
• Identification and validation of a core set of informative genic SSR and SNP markers for assaying functional diversity in barley
• Identification of Novel Loci Associated with Gastrointestinal Parasite Resistance in a Red Maasai x Dorper Backcross Population
• Identification of SNP Markers for Resistance to Salmonella and IBDV in Indigenous Ethiopian Chickens
• Identifying Transcription Factor Genes Associated with Yield Traits in Chickpea
• Identifying highly informative genetic markers for quantification of ancestry proportions in crossbred sheep populations: implications for choosing optimum levels of admixture
• Incorporating genome-wide association into eco-physiological simulation to identify markers for improving rice yields
• Indel‐seq: a fast‐forward genetics approach for identification of trait‐associated putative candidate genomic regions and its application in pigeonpea (Cajanus cajan)
• Integrating a genome-wide association study with a large-scale transcriptome analysis to predict genetic regions influencing the glycaemic index and texture in rice.
• KASP Genotyping as a Molecular Tool for Diagnosis of Cassava-Colonizing Bemisia tabaci.
• Large-scale deployment of a rice 6 K SNP array for genetics and breeding applications.
• Melatonin is responsible for rice resistance to rice stripe virus infection through a nitric oxide-dependent pathway.
• Mining conifers' mega-genome using rapid and efficient multiplexed high-throughput genotyping-by-sequencing (GBS) SNP discovery platform
• Mining of Gene-Based SNPs from Publicly Available ESTs and Their Conversion to Cost-Effective Genotyping Assay in Sorghum (Sorghum bicolor (L.) Moench)
• Molecular Characterization of a Diverse Maize Inbred Line Collection and its Potential Utilization for Stress Tolerance Improvement
• Molecular diversity and selective sweeps in maize inbred lines adapted to African highlands.
• Molecular mapping of stripe rust resistance gene YrJ22 in Chinese wheat cultivar Jimai 22
• Morphological and metabolic profiling of a tropical-adapted potato association panel subjected to water recovery treatment reveals new insights into plant vigor.
• Novel Sources of aus Rice for Zinc Deficiency Tolerance Identified Through Association Analysis Using High-Density SNP Array
• Novel and known signals of selection for fat deposition in domestic sheep breeds from Africa and Eurasia
• Novel and known signals of selection for fat deposition in domestic sheep breeds from Africa and Eurasia.
• Nucleotide polymorphisms in a pine ortholog of the Arabidopsis degrading enzyme cellulase KORRIGAN are associated with early growth performance in Pinus pinaster
• Pharmosome: an integrative and collective database for exploration and analysis of single nucleotide polymorphisms associated with disease
• Phenotypic and genome-wide association analysis of spike ethylene in diverse wheat genotypes under heat stress.
• Phenotypic characterization and validation of provitamin A functional genes in early maturing provitamin A-quality protein maize (Zea mays) inbred lines.
• Polymorphisms in MC1R and ASIP genes are associated with coat color variation in the Arabian camel.
• QTL mapping for grain yield-related traits in bread wheat via SNP-based selective genotyping
• QTLs influencing panicle size detected in two reciprocal introgressive line (IL) populations in rice (Oryza sativa L.)
• QTL‐seq for rapid identification of candidate genes for 100‐seed weight and root/total plant dry weight ratio under rainfed conditions in chickpea
• Quality control genotyping for assessment of genetic identity and purity in diverse tropical maize inbred lines.
• Rare allele of HvLox-1 associated with lipoxygenase activity in barley (Hordeum vulgare L.)
• Relationships between heterosis, genetic distances and specific combining ability among CIMMYT and Zimbabwe developed maize inbred lines under stress and optimal conditions
• Rice SNP-Seek database for gemic variation
• Rice SNP-seek database update: new SNPs, indels, and queries.
• SNP markers for low molecular glutenin subunits (LMW-GSs) at the Glu-A3 and Glu-B3 loci in bread wheat.
• SNP-Seek database of SNPs derived from 3000 rice genomes
• SNP-based discovery of salinity-tolerant QTLs in a bi-parental population of rice (Oryza sativa).
• SNPector: SNP inspecting tool to detect disease existence and drug response in direct naked sequencing depends on mutation index
• SNPector: SNP inspection tool for diagnosing gene pathogenicity and drug response in a naked sequence
• Selection of trait-specific markers and multi-environment models improve genomic predictive ability in rice
• Selection of trait-specific markers and multi-environment models improve genomic predictive ability in rice.
• Signatures of Selection in Admixed Dairy Cattle in Tanzania.
• Single nucleotide polymorphism (SNP) diversity of cassava genotypes in relation to cassava brown streak disease in Mozambique
• Sorghum Genetic Resources
• Technical note: Development and application of KASP assays for rapid screening of 8 genetic defects in Holstein cattle.
• The Development of Quality Control Genotyping Approaches: A Case Study Using Elite Maize Lines.
• The feasibility of using low-density marker panels for genotype imputation and genomic prediction of crossbred dairy cattle of East Africa
• The impact of SNP fingerprinting and parentage analysis on the effectiveness of variety recommendations in cacao
• Unravelling the Genetic Diversity among Cassava Bemisia tabaci Whiteflies Using NextRAD Sequencing.
• When less can be better: How can we make genomic selection more cost-effective and accurate in barley?
• Whole-genome scanning for mapping determinacy in Pigeonpea (Cajanus spp.)