indel Concept

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research area of

• Ekue, Marius, Scientist, The Alliance of Bioversity International and CIAT, The Alliance of Bioversity and CIAT
• HE, Xinyao, Wheat Pathology, CIMMYT, CIMMYT
• HE, Zhonghu, Wheat Breeder, CCR, CIMMYT, CIMMYT
• Ismail, Abdelbagi, Regional Representative, Africa, CESD, ILRI
• Khan, Aamir, Research Associate, ICRISAT, ICRISAT
• Kim, Sung Ryul, Scientist-I, IRRI, IRRI
• Leung, Hei, Principal Scientist, IRRI, IRRI
• McNally, Kenneth, Senior Scientist II, IRRI, IRRI
• Saxena, Rachit, Scientist (Applied Genomics), ICRISAT, CIMMYT
• Singh, Vikas, Regional Breeding Lead & Co-Ordinator, ICRISAT, ICRISAT
• Sinha, Pallavi, Scientist, Rice Breeding, ICRISAT, ICRISAT
• Vanika, Garg, Research Scholar, ICRISAT, ICRISAT

subject area of

• Allelic diversity of newly characterized submergence-tolerant rice (Oryza sativa L.) germplasm from Bangladesh
• Allelic variants of phytoene synthase 1 (Psy1) genes in Chinese and CIMMYT wheat cultivars and development of functional markers for flour colour
• Assessing trait contribution and mapping novel QTL for salinity tolerance using the Bangladeshi rice landrace Capsule
• Association of nad7a Gene with Cytoplasmic Male Sterility in Pigeonpea
• Characterization and mapping of Dt1 locus which co-segregates with CcTFL1 for growth habit in pigeonpea
• Characterization of TaCOMT genes associated with stem lignin content in common wheat and development of a gene-specific marker
• Characterization of dense and erect panicle 1 gene (tadep1) located on common wheat group 5 chromosomes and development of allele-specific markers
• Characterization of indica–japonica subspecies-specific InDel loci in wild relatives of rice (Oryza sativa L. subsp. indica Kato and subsp. japonica Kato)
• CicArVarDB: SNP and InDel database for advancing genetics research and breeding applications in chickpea
• Cloning and genetic diversity analysis of a new P5CS gene from common bean (Phaseolus vulgaris L.)
• Cloning and phylogenetic analysis of polyphenol oxidase genes in common wheat and related species
• Comparative sequence analyses of the major quantitative trait locus phosphorus uptake 1 (Pup1) reveal a complex genetic structure.
• Complete plastome assemblies from a panel of 13 diverse potato taxa.
• Detection of a new QTL/gene for growth habit in chickpea CaLG1 using wide and narrow crosses
• Development and Application of High-Density Axiom Cajanus SNP Array with 56K SNPs to Understand the Genome Architecture of Released Cultivars and Founder Genotypes
• Development and validation of allele-specific SNP/indel markers for eight yield-enhancing genes using whole-genome sequencing strategy to increase yield potential of rice, Oryza sativa L.
• Development of an intergeneric hybrid between Oryza sativa L. and Leersia perrieri (A. Camus) Launert
• Development of nuclear, chloroplast and mitochondrial SNP markers for Khaya sp.
• Discovery of Putative Herbicide Resistance Genes and Its Regulatory Network in Chickpea Using Transcriptome Sequencing
• EST-derived single nucleotide polymorphism markers for assembling genetic and physical maps of the barley genome.
• Extensive polymorphism of Ra86 genes in field populations of Rhipicephalus appendiculatus from Kenya.
• Fine mapping of Grh1 , a major gene associated with antibiosis to green rice leafhopper in rice
• First-generation HapMap in Cajanus spp. reveals untapped variations in parental lines of mapping populations.
• Genetic Erosion from Modern Varieties into Traditional Upland Rice Cultivars (Oryza sativa L.) in Northern Thailand
• Genetic analysis and gene mapping of a new rolled-leaf mutant in rice ( Oryza sativa L.)
• Genetic diversity and differentiation among the species of African mahogany (Khaya spp.) based on a large SNP array
• Genome- wide structural and functional variant discovery of rice landraces using genotyping by sequencing.
• Genome-Wide Discovery and Deployment of Insertions and Deletions Markers Provided Greater Insights on Species, Genomes, and Sections Relationships in the Genus Arachis
• Genome-wide development and deployment of informative intron-spanning and intron-length polymorphism markers for genomics-assisted breeding applications in chickpea
• Genome-wide insertion-deletion (InDel) marker discovery and genotyping for genomics-assisted breeding applications in chickpea
• HRM technology for the identification and characterization of INDEL and SNPs mutations in genes involved in drought and salt tolerance of durum wheat
• Haplotype analysis of molecular markers linked to stem rust resistance genes in Ethiopian improved durum wheat varieties and tetraploid wheat landraces
• Identification and validation of a core set of informative genic SSR and SNP markers for assaying functional diversity in barley
• InDel markers: An extended marker resource for molecular breeding in chickpea
• Indel‐seq: a fast‐forward genetics approach for identification of trait‐associated putative candidate genomic regions and its application in pigeonpea (Cajanus cajan)
• Intraspecific variation within Castor bean (Ricinus communis L.) based on chloroplast genomes
• Marker-Assisted Introgression of Quantitative Resistance Gene pi21 Confers Broad Spectrum Resistance to Rice Blast
• Molecular Mapping of QTL for Fusarium Head Blight Resistance in a Doubled Haploid Population of Chinese Bread Wheat.
• Multiple origins of the determinate growth habit in domesticated common bean (Phaseolus vulgaris)
• NGSEP3: accurate variant calling across species and sequencing protocols
• New eSSR and gSSR markers added to Australian barley maps
• On the Dispersal of Bottle Gourd [Lagenaria siceraria (Mol.) Standl.] Out of Africa: a Contribution from the Analysis of Nuclear Ribosomal DNA Haplotypes, Divergent Paralogs and Variants of 5.8S Protein Sequences
• Optimization of sequence alignment for simple sequence repeat regions
• QTLs associated with tolerance of flooding during germination in rice (Oryza sativa L.)
• Rapid method for detecting SNPs on agarose gels and its application in candidate gene mapping.
• Relationship, evolutionary fate and function of two maize co-orthologs of rice GW2 associated with kernel size and weight.
• Rice functional genomics and breeding database (RFGB)-3K-rice SNP and InDel sub-database
• Robust CRISPR/Cas9 mediated genome editing tool for banana and plantain (Musa spp.)
• SNP genotyping: the KASP assay
• Single Nucleotide Polymorphisms in Common Bean: Their Discovery and Genotyping Using a Multiplex Detection System
• Single strand conformation polymorphism based SNP and Indel markers for genetic mapping and synteny analysis of common bean (Phaseolus vulgaris L.)
• Sorghum Genetic Resources
• TaGS - D1 , an ortholog of rice OsGS3 , is associated with grain weight and grain length in common wheat
• The discovery and phylogenetic implications of a novel 41 bp plastid DNA deletion in wild potatoes
• Use of EcoTILLING to identify natural allelic variants of rice candidate genes involved in salinity tolerance