Publications in VIVO

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Pandey, Manish K Scientist Genomics, ICRISAT

ICRISAT

India

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- Transcriptional responses of toxigenic and atoxigenic isolates of Aspergillus flavus to oxidative stress in aflatoxin-conducive and non-conducive media. World Mycotoxin Journal. 1-16. 2020
- Fatty acid desaturase-2 (ahFAD2) mutant alleles in peanut (Arachis hypogaea L.) pre-breeding lines: an insight into the source, features, discourse, and selection of novel pre-breeding lines. Genetic Resources and Crop Evolution. 1-21. 2020
- Genome-based trait prediction in multi- environment breeding trials in groundnut.. Theoretical and Applied Genetics. 133:3101-3117. 2020
- Two New Aspergillus flavus Reference Genomes Reveal a Large Insertion Potentially Contributing to Isolate Stress Tolerance and Aflatoxin Production.. G3-GENES GENOMES GENETICS. 10:3515-3531. 2020
- Molecular mapping of QTLs for yield related traits in recombinant inbred line (RIL) population derived from the popular rice hybrid KRH-2 and their validation through SNP genotyping.. Scientific Reports. 10:13695. 2020
- Combining High Oleic Acid Trait and Resistance to Late Leaf Spot and Rust Diseases in Groundnut (Arachis hypogaea L.).. Frontiers in Genetics. 11:514. 2020
- Dissection of the Genetic Basis of Oil Content in Chinese Peanut Cultivars Through Association Mapping. BMC Genetics. 21:60. 2020
- Nested‐association mapping (NAM)‐based genetic dissection uncovers candidate genes for seed and pod weights in peanut ( Arachis hypogaea ). Plant Biotechnology Journal. 18:1457-1471. 2020
- G × E interactions in QTL introgression lines of Spanish-type groundnut (Arachis hypogaea L.). Euphytica. 216:1-20. 2020
- Arachis hypogaea gene expression atlas for fastigiata subspecies of cultivated groundnut to accelerate functional and translational genomics applications.. Plant Biotechnology Journal. 18:2187-2200. 2020
- Translational genomics for achieving higher genetic gains in groundnut.. Theoretical and Applied Genetics. 133:1679-1702. 2020
- Transcriptome and metabolome reveal redirection of flavonoids in a white testa peanut mutant.. BMC Plant Biology. 20:161. 2020
- Whole-genome resequencing-based QTL-seq identified candidate genes and molecular markers for fresh seed dormancy in groundnut. Plant Biotechnology Journal. 18:992-1003. 2020
- Identification of quantitative trait loci associated with iron deficiency chlorosis resistance in groundnut ( Arachis hypogaea ). Plant Breeding. 139:790-803. 2020
- Genome-wide transcriptome and physiological analyses provide new insights into peanut drought response mechanisms.. Scientific Reports. 10:4071. 2020
- Functional Biology and Molecular Mechanisms of Host-Pathogen Interactions for Aflatoxin Contamination in Groundnut (Arachis hypogaea L.) and Maize (Zea mays L.).. Frontiers in Microbiology. 11:227. 2020
- Genome-wide expression quantitative trait locus analysis in a recombinant inbred line population for trait dissection in peanut.. Plant Biotechnology Journal. 18:779-790. 2020
- Advances in Crop Improvement and Delivery Research for Nutritional Quality and Health Benefits of Groundnut (Arachis hypogaea L.).. Frontiers in Plant Science. 11:29. 2020
- Molecular Basis of Root Nodule Symbiosis between Bradyrhizobium and 'Crack-Entry' Legume Groundnut (Arachis hypogaea L.). 2020
- Publisher Correction: A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea). Scientific Reports. 10:2244. 2020
- Improvement of three popular Indian groundnut varieties for foliar disease resistance and high oleic acid using SSR markers and SNP array in marker-assisted backcrossing. Crop Journal. 8:1-15. 2020
- Discovery of two novel and adjacent QTLs on chromosome B02 controlling resistance against bacterial wilt in peanut variety Zhonghua 6.. Theoretical and Applied Genetics. 133:1133-1148. 2020
- Steady expression of high oleic acid in peanut bred by marker-assisted backcrossing for fatty acid desaturase mutant alleles and its effect on seed germination along with other seedling traits.. PLOS ONE. 14. 2019
- A recombination bin-map identified a major QTL for resistance to Tomato Spotted Wilt Virus in peanut (Arachis hypogaea).. Scientific Reports. 9:18246. 2019
- Next‐generation sequencing identified genomic region and diagnostic markers for resistance to bacterial wilt on chromosome B02 in peanut (Arachis hypogaea L.). Plant Biotechnology Journal. 17:2356-2369. 2019
- Hypoallergen Peanut Lines Identified Through Large-Scale Phenotyping of Global Diversity Panel: Providing Hope Toward Addressing One of the Major Global Food Safety Concerns.. Frontiers in Genetics. 10:1177. 2019
- Genomic regions associated with resistance to peanut bud necrosis disease (PBND) in a recombinant inbred line (RIL) population. Plant Breeding. 138:748-760. 2019
- Carbohydrate, glutathione, and polyamine metabolism are central to Aspergillus flavus oxidative stress responses over time.. BMC Microbiology. 19:1-14. 2019
- Genetics, genomics and breeding of groundnut (Arachis hypogaea L.).. Plant Breeding. 138:425-444. 2019
- Discovery of genomic regions and candidate genes controlling shelling percentage using QTL-seq approach in cultivated peanut (Arachis hypogaea L.).. Plant Biotechnology Journal. 17:1248-1260. 2019
- Sequencing of Cultivated Peanut, Arachis hypogaea, Yields Insights into Genome Evolution and Oil Improvement. Molecular Plant. 12:920-934. 2019
- An Improved Enzyme-Linked Immunosorbent Assay (ELISA) Based Protocol Using Seeds for Detection of Five Major Peanut Allergens Ara h 1, Ara h 2, Ara h 3, Ara h 6, and Ara h 8.. Frontiers in Nutrition. 6:68. 2019
- Mitigating Aflatoxin Contamination in Groundnut through A Combination of Genetic Resistance and Post-Harvest Management Practices.. Toxins. 11:315. 2019
- The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics. 51:865-876. 2019
- The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics. 51:877-884. 2019
- Genetic imprints of domestication for disease resistance, oil quality, and yield component traits in groundnut (Arachis hypogaea L.). Molecular Genetics and Genomics. 294:365-378. 2019
- Genotyping-by-sequencing based genetic mapping reveals large number of epistatic interactions for stem rot resistance in groundnut. Theoretical and Applied Genetics. 132:1001-1016. 2019
- Climate-Smart Groundnuts for Achieving High Productivity and Improved Quality: Current Status, Challenges, and Opportunities 2019
- Carbohydrate, glutathione, and polyamine metabolism are central to Aspergillus flavus oxidative stress responses over time. bioRxiv. 511170. 2019
- Comparative Studies on the Role of Organic Biostimulant in Resistant and Susceptible Cultivars of Rice Grown under Saline Stress - Organic Biostimulant Alleviate Saline Stress in Tolerant and Susceptible Cultivars of Rice. Journal of Crop Science and Biotechnology. 21:459-467. 2018
- Assessing variability for disease resistance and nutritional quality traits in an interspecific collection of groundnut (Arachis hypogaea). Plant Breeding. 137:883-894. 2018
- Sequencing Analysis of Genetic Loci for Resistance for Late Leaf Spot and Rust in Peanut (Arachis hypogaea L.).. Frontiers in Plant Science. 9:1727. 2018
- High-density genetic map using whole-genome resequencing for fine mapping and candidate gene discovery for disease resistance in peanut.. Plant Biotechnology Journal. 16:1954-1967. 2018
- Improving oil quality by altering levels of fatty acids through marker-assisted selection of ahfad2 alleles in peanut (Arachis hypogaea L.). Euphytica. 214:1-15. 2018
- Groundnut Entered Post-genome Sequencing Era: Opportunities and Challenges in Translating Genomic Information from Genome to Field 2018
- Accelerating genetic gains in legumes for the development of prosperous smallholder agriculture: integrating genomics, phenotyping, systems modelling and agronomy.. Journal of Experimental Botany. 69:3293-3312. 2018
- Identification of main effect and epistatic quantitative trait loci for morphological and yield-related traits in peanut (Arachis hypogaea L.). Molecular Breeding. 38:7. 2018
- Proteome analysis of Aspergillus flavus isolate-specific responses to oxidative stress in relationship to aflatoxin production capability.. Scientific Reports. 8:3430-3430. 2018
- Development of AhMITE1 markers through genome-wide analysis in peanut (Arachis hypogaea L.).. BMC Research Notes. 11:10-10. 2018
- Current Status and Future Prospects of Next-Generation Data Management and Analytical Decision Support Tools for Enhancing Genetic Gains in Crops. Advances in Biochemical Engineering \/ Biotechnology. 164:277-292. 2018
- Plant Genetics and Molecular Biology: An Introduction.. Advances in Biochemical Engineering \/ Biotechnology. 164:1-9. 2018
- Genome-Wide Discovery and Deployment of Insertions and Deletions Markers Provided Greater Insights on Species, Genomes, and Sections Relationships in the Genus Arachis. Frontiers in Plant Science. 8:2064-2064. 2017
- Genetic Variation and Association Mapping of Seed-Related Traits in Cultivated Peanut (Arachis hypogaea L.) Using Single-Locus Simple Sequence Repeat Markers.. Frontiers in Plant Science. 8:2105-2105. 2017
- Current Status and Prospects of Genomic Selection in Legumes 2017
- SSR markers associated to early leaf spot disease resistance through selective genotyping and single marker analysis in groundnut (Arachis hypogaea L.).. Biotechnology Reports. 15:132-137. 2017
- Aspergillus flavus infection triggered immune responses and host-pathogen cross-talks in groundnut during in-vitro seed colonization.. Scientific Reports. 7:9659-9659. 2017
- Metabolomics for Plant Improvement: Status and Prospects.. Frontiers in Plant Science. 8:1302-1302. 2017
- QTL-seq approach identified genomic regions and diagnostic markers for rust and late leaf spot resistance in groundnut (Arachis hypogaea L.).. Plant Biotechnology Journal. 15:927-941. 2017
- Genome-Wide Discovery of Microsatellite Markers from Diploid Progenitor Species, Arachis duranensis and A. ipaensis, and Their Application in Cultivated Peanut (A. hypogaea).. Frontiers in Plant Science. 8:1209-1209. 2017
- Molecular Mapping of Oil Content and Fatty Acids Using Dense Genetic Maps in Groundnut (Arachis hypogaea L.). Frontiers in Plant Science. 8:794-794. 2017
- Harnessing Genetic Diversity of Wild Arachis Species for Genetic Enhancement of Cultivated Peanut. Crop Science. 57:1121-1131. 2017
- Genome-wide SNP Genotyping Resolves Signatures of Selection and Tetrasomic Recombination in Peanut. Molecular Plant. 10:309-322. 2017
- Development and Evaluation of a High Density Genotyping 'Axiom_Arachis' Array with 58 K SNPs for Accelerating Genetics and Breeding in Groundnut.. Scientific Reports. 7:40577. 2017
- Co-localization of major quantitative trait loci for pod size and weight to a 3.7 cM interval on chromosome A05 in cultivated peanut (Arachis hypogaea L.). BMC Genomics. 18:58-58. 2017
- Classical and Molecular Approaches for Mapping of Genes and Quantitative Trait Loci in Peanut 2017
- Drought stress and aflatoxin contamination: transcriptional responses of Aspergillus flavusto oxidative stress are related to stress tolerance and aflatoxin production capability 2017
- Future Prospects for Peanut Improvement 2017
- Genetic Dissection of Novel QTLs for Resistance to Leaf Spots and Tomato Spotted Wilt Virus in Peanut (Arachis hypogaea L.). Frontiers in Plant Science. 8:25. 2017
- History and Impact of the International Peanut Genome Initiative: The Exciting Journey Toward Peanut Whole-Genome Sequencing 2017
- Legume genomics: A perspective 2017
- Management of aflatoxin contamination in groundnut by enhancing host-plant resistance 2017
- Molecular breeding tools improved drought tolerant groundnut variety for resistance tofoliar fungal diseases 2017
- Next generation sequencing approaches for understanding genetic mechanism of drought tolerance in Valencia Peanut 2017
- Sequencing Ancestor Diploid Genomes for Enhanced Genome Understanding and Peanut Improvement 2017
- The Peanut Genome: An Introduction 2017
- The first high density genotyping ?Axiom_Arachis? 58K SNPs array for genetic studies and molecular breeding in groundnut 2017
- Development and deployment of a high-density linkage map identified quantitative trait loci for plant height in peanut (Arachis hypogaea L.). Scientific Reports. 6:39478. 2016
- Oxidative stress and carbon metabolism influence Aspergillus flavus transcriptome composition and secondary metabolite production.. Scientific Reports. 6:38747. 2016
- Transcriptome Analysis of a New Peanut Seed Coat Mutant for the Physiological Regulatory Mechanism Involved in Seed Coat Cracking and Pigmentation.. Frontiers in Plant Science. 7:1491-1491. 2016
- Mapping Quantitative Trait Loci of Resistance to Tomato Spotted Wilt Virus and Leaf Spots in a Recombinant Inbred Line Population of Peanut (Arachis hypogaea L.) from SunOleic 97R and NC94022. PLOS ONE. 11. 2016
- Foliar fungal disease-resistant introgression lines of groundnut (Arachis hypogaea L.) record higher pod and haulm yield in multilocation testing. Plant Breeding. 135:355-366. 2016
- Identification of two major quantitative trait locus for fresh seed dormancy using the diversity arrays technology and diversity arrays technology-seq based genetic map in Spanish-type peanuts. Plant Breeding. 135:367-375. 2016
- Emerging Genomic Tools for Legume Breeding: Current Status and Future Prospects. Frontiers in Plant Science. 7:455-455. 2016
- QTL mapping for late leaf spot and rust resistance using an improved genetic map and extensive phenotypic data on a recombinant inbred line population in peanut (Arachis hypogaea L.). Euphytica. 209:147-156. 2016
- Molecular breeding for introgression of fatty acid desaturase mutant alleles (ahFAD2A and ahFAD2B) enhances oil quality in high and low oil containing peanut genotypes. Plant Science. 242:203-213. 2016
- Recent Advances in Peanut Breeding and Genetics 2016
- Responses of Aspergillus flavus to Oxidative Stress Are Related to Fungal Development Regulator, Antioxidant Enzyme, and Secondary Metabolite Biosynthetic Gene Expression 2016
- Identification and Evaluation of Single-Nucleotide Polymorphisms in Allotetraploid Peanut (Arachis hypogaea L.) Based on Amplicon Sequencing Combined with High Resolution Melting (HRM) Analysis.. Frontiers in Plant Science. 6:1068-1068. 2015
- Legume Crops Phylogeny and Genetic Diversity for Science and Breeding. Critical Reviews in Plant Sciences. 34:43-104. 2015
- Identification of quantitative trait loci for yield and yield related traits in groundnut (Arachis hypogaea L.) under different water regimes in Niger and Senegal.. Euphytica. 206:631-647. 2015
- Genetic Mapping of QTLs Controlling Fatty Acids Provided Insights into the Genetic Control of Fatty Acid Synthesis Pathway in Peanut (Arachis hypogaea L.). PLOS ONE. 10. 2015
- Validation of markers linked to late leaf spot and rust resistance, and selection of superior genotypes among diverse recombinant inbred lines and backcross lines in peanut (Arachis hypogaea L.). Euphytica. 204:343-351. 2015
- Identification of QTLs associated with oil content and mapping FAD2 genes and their relative contribution to oil quality in peanut (Arachis hypogaea L.). BMC Genetics. 15:133-133. 2014
- Genomewide Association Studies for 50 Agronomic Traits in Peanut Using the ‘Reference Set’ Comprising 300 Genotypes from 48 Countries of the Semi-Arid Tropics of the World. PLOS ONE. 9. 2014
- Whitebacked planthopper Sogatella furcifera (Horváth) (Homoptera: Delphacidae) resistance in rice variety Sinna Sivappu. Euphytica. 200:139-148. 2014
- Marker-assisted introgression of a QTL region to improve rust resistance in three elite and popular varieties of peanut (Arachis hypogaea L.). Theoretical and Applied Genetics. 127:1771-1781. 2014
- Genomics‑assisted breeding in four major pulse crops of developing countries: present status and prospects. Theoretical and Applied Genetics. 127:1263-1291. 2014
- Diversification of primary gene pool through introgression of resistance to foliar diseases from synthetic amphidiploids to cultivated groundnut (Arachis hypogaea L.). Crop Journal. 2:110-119. 2014
- Development of NILs from heterogeneous inbred families for validating the rust resistance QTL in peanut (Arachis hypogaea L.). Plant Breeding. 133:80-85. 2014
- Genetic Mapping and Quantitative Trait Loci Analysis for Disease Resistance Using F 2 and F 5 Generation-based Genetic Maps Derived from 'Tifrunner' × 'GT-C20' in Peanut. The Plant Genome. 6:1-10. 2013
- Single Nucleotide Polymorphism-based Genetic Diversity in the Reference Set of Peanut (Arachis spp.) by Developing and Applying Cost-Effective Kompetitive Allele Specific Polymerase Chain Reaction Genotyping Assays. PLANT GENOME. 6:1-11. 2013
- Improvement of two traditional Basmati rice varieties for bacterial blight resistance and plant stature through morphological and marker-assisted selection. Molecular Breeding. 31:239-246. 2013
- Recent Advances in Molecular Genetic Linkage Maps of Cultivated Peanut. Peanut Science. 40:95-106. 2013
- Identification of Expressed Resistance Gene Analogs from Peanut (Arachis hypogaea L.) Expressed Sequence Tags. Journal of Integrative Plant Biology. 55:453-461. 2013
- Integrated Consensus Map of Cultivated Peanut and Wild Relatives Reveals Structures of the A and B Genomes of Arachis and Divergence of the Legume Genomes. DNA Research. 20:173-184. 2013
- Groundnut improvement: use of genetic and genomic tools. Frontiers in Plant Science. 4:23-23. 2013
- QTLs from Genome to Field Using Markers and Genetic Maps for Peanut Improvement 2013
- Marker-Assisted Selection for Biotic Stress Resistance in Peanut 2013
- Advances in genetics and molecular breeding of three legume crops of semi-arid tropics using next-generation sequencing and high-throughput genotyping technologies. Journal of Biosciences. 37:811-820. 2012
- Quantitative trait locus analysis and construction of consensus genetic map for drought tolerance traits based on three recombinant inbred line populations in cultivated groundnut (Arachis hypogaea L.).. Molecular Breeding. 30:757-772. 2012
- Quantitative trait locus analysis and construction of consensus genetic map for foliar disease resistance based on two recombinant inbred line populations in cultivated groundnut ( Arachis hypogaea L.). Molecular Breeding. 30:773-788. 2012
- An International Reference Consensus Genetic Map with 897 Marker Loci Based on 11 Mapping Populations for Tetraploid Groundnut (Arachis hypogaea L.). PLOS ONE. 7. 2012
- Highly informative genic and genomic SSR markers to facilitate molecular breeding in cultivated groundnut (Arachis hypogaea). Plant Breeding. 131:139-147. 2012
dataset
document
review
- Nested Association Mapping (NAM) Populations: Present Status and Future Prospects in the Genomics Era. Critical Reviews in Plant Sciences. 49-67. 2021
- Epigenetics and epigenomics: underlying mechanisms, relevance, and implications in crop improvement. Functional & Integrative Genomics. 739-761. 2020
- Peg Biology: Deciphering the Molecular Regulations Involved During Peanut Peg Development.. Frontiers in Plant Science. 1289. 2019
- Genomics, genetics and breeding of tropical legumes for better livelihoods of smallholder farmers.. Plant Breeding. 487-499. 2019
- Toward the sequence-based breeding in legumes in the post-genome sequencing era.. Theoretical and Applied Genetics. 797-816. 2019
- Achievements and prospects of genomics-assisted breeding in three legume crops of the semi-arid tropics. Biotechnology Advances. 1120-1134. 2013
- Advances in Arachis genomics for peanut improvement. Biotechnology Advances. 639-651. 2012