selected publications
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article
- The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems. PATTERNS. 1:100105-100105. 2020
- COPO: a metadata platform for brokering FAIR data in the life sciences. F1000Research. 9:495. 2020
- Enabling reusability of plant phenomic datasets with MIAPPE 1.1.. New Phytologist. 227:260-273. 2020
- Text Mining National Commitments towards Agrobiodiversity Conservation and Use. Sustainability. 12. 2020
- BrAPI-an application programming interface for plant breeding applications.. Bioinformatics. 35:4147-4155. 2019
- COPO: a metadata platform for brokering FAIR data in the life sciences. bioRxiv. 782771. 2019
- Applying FAIR Principles to Plant Phenotypic Data Management in GnpIS 2019
- The Planteome database:: an integrated resource for reference ontologies, plant genomics and phenomics. Nucleic Acids Research. 46. 2018
- A Natural Language Processing Pipeline to Extract Phenotypic Data from Formal Taxonomic Descriptions with a Focus on Flagellate Plants. 2018
- AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. Database. 2018:1-32. 2018
- AgroPortal: A vocabulary and ontology repository for agronomy. Computers and Electronics in Agriculture. 144:126-143. 2018
- Developing data interoperability using standards: A wheat community use case.. F1000Research. 6:1843-1843. 2017
- Towards a thesaurus of plant characteristics: an ecological contribution. Journal of Ecology. 105:298-309. 2017
- The Planteome project 2016
- AgroPortal : A Proposition for Ontology-Based Services in the Agronomic Domain. F1000Research. 5. 2016
- The Crop Ontology: a source of standard traits and variables for breeding and agronomy 2016
- Vers un paradigme ontologique d'interprétation des images de télédétection 2014
- A Thesaurus for Soil Invertebrate Trait-Based Approaches. PLOS ONE. 9. 2014
- GreenPhylDB v2.0: comparative and functional genomics in plants. Nucleic Acids Research. 39:1095-1102. 2011
- GreenPhylDB v2.0: An improved database for plant functional genomics 2009
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document
- Developing data interoperability using standards: A wheat community use case 2017
- AgroPortal: a proposition for ontology-based services in the agronomic domain 2016
- Crop ontology: integration of standard variables 2016
- Planteome: A resource for common reference ontologies and applications for plant biology 2016