selected publications
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letter
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article
- Application of Genomic Selection at the Early Stage of Breeding Pipeline in Tropical Maize. Frontiers in Plant Science. 12. 2021
- Disaggregating the Value of Conservation Agriculture to Inform Smallholder Transition to Sustainable Farming: A Mexican Case Study. AGRONOMY-BASEL. 11. 2021
- Effects of conservation agriculture on physicochemical soil health in 20 maize-based trials in different agro-ecological regions across Mexico. Land Degradation & Development. 32:2242-2256. 2021
- Maximizing efficiency of genomic selection in CIMMYT's tropical maize breeding program.. Theoretical and Applied Genetics. 134:1-16. 2021
- Scalable Sparse Testing Genomic Selection Strategy for Early Yield Testing Stage. Frontiers in Plant Science. 12. 2021
- Selection of sweet corn genotypes for resistance to Northern Leaf Blight using longitudinal analysis. Maydica. 66. 2021
- Strategic use of Iranian bread wheat landrace accessions for genetic improvement: Core set formulation and validation. Plant Breeding. 140:87-99. 2021
- UAV-based high-throughput phenotyping to increase prediction and selection accuracy in maize varieties under artificial MSV inoculation. Computers and Electronics in Agriculture. 184. 2021
- Diversity analysis of 80,000 wheat accessions reveals consequences and opportunities of selection footprints. Nature Communications. 11:4572. 2020
- Hermetic storage technologies reduce maize pest damage in smallholder farming systems in Mexico. Journal of Stored Products Research. 88:101664. 2020
- Genomic Prediction Enhanced Sparse Testing for Multi-environment Trials. G3-GENES GENOMES GENETICS. 10:2725-2739. 2020
- Genetic gains with rapid-cycle genomic selection for combined drought and waterlogging tolerance in tropical maize (Zea mays L.).. PLANT GENOME. 13. 2020
- Hybrid Breeding for MLN Resistance: Heterosis, Combining Ability, and Hybrid Prediction. PLANTS-BASEL. 9:468. 2020
- Genetic diversity analysis using DArTseq and SNP markers in populations of Aegilops species from Azerbaijan. Genetic Resources and Crop Evolution. 67:281-291. 2020
- An Evaluation of Kernel Zinc in Hybrids of Elite Quality Protein Maize (QPM) and Non-QPM Inbred Lines Adapted to the Tropics Based on a Mating Design. AGRONOMY-BASEL. 10. 2020
- Effect of F1 and F2 generations on genetic variability and working steps of doubled haploid production in maize. PLOS ONE. 14. 2019
- Modeling Genotype × Environment Interaction Using a Factor Analytic Model of On‐Farm Wheat Trials in the Yaqui Valley of Mexico. Agronomy Journal. 111:2647-2657. 2019
- Multivariate Bayesian Analysis of On‐Farm Trials with Multiple‐Trait and Multiple‐Environment Data. Agronomy Journal. 111:2658-2669. 2019
- Factor analysis to investigate genotype and genotype × environment interaction effects on pro-vitamin A content and yield in maize synthetics. Euphytica. 215:180. 2019
- Deep Kernel for Genomic and Near Infrared Predictions in Multi-environment Breeding Trials.. G3-GENES GENOMES GENETICS. 9:2913-2924. 2019
- isqg: A Binary Framework for in Silico Quantitative Genetics. G3-GENES GENOMES GENETICS. 9:2425-2428. 2019
- Maize responsiveness to Azospirillum brasilense: Insights into genetic control, heterosis and genomic prediction.. PLOS ONE. 14:1-22. 2019
- Morphological and physiological responses of Guazuma ulmifolia Lam. to different pruning dates. Agroforestry Systems. 93:461-470. 2019
- Correction to: High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging.. Plant Methods. 15:52. 2019
- Effect of Linagliptin vs Placebo on Major Cardiovascular Events in Adults With Type 2 Diabetes and High Cardiovascular and Renal Risk The CARMELINA Randomized Clinical Trial. JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION. 321:69-79. 2019
- Identification of donors for low-nitrogen stress with maize lethal necrosis (MLN) tolerance for maize breeding in sub-Saharan Africa.. Euphytica. 215:80. 2019
- Linagliptin Effects on Heart Failure and Related Outcomes in Individuals With Type 2 Diabetes Mellitus at High Cardiovascular and Renal Risk in CARMELINA. CIRCULATION. 139:351-361. 2019
- A Bayesian Decision Theory Approach for Genomic Selection. G3-GENES GENOMES GENETICS. 8:3019-3037. 2018
- BGGE: A New Package for Genomic-Enabled Prediction Incorporating Genotype × Environment Interaction Models. G3-GENES GENOMES GENETICS. 8:3039-3047. 2018
- Efficacy of Beauveria bassiana applications on coffee berry borer across an elevation gradient in Hawaii.. Biocontrol Science and Technology. 28:995-1013. 2018
- Harnessing genetic potential of wheat germplasm banks through impact-oriented-prebreeding for future food and nutritional security.. Scientific Reports. 8:12527. 2018
- SASHAYDIALL: A SAS Program for Hayman’s Diallel Analysis. Crop Science. 58:1605-1615. 2018
- High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging.. Plant Methods. 14:49. 2018
- Bayesian functional regression as an alternative statistical analysis of high-throughput phenotyping data of modern agriculture.. Plant Methods. 14:46-46. 2018
- Genomic-Enabled Prediction Kernel Models with Random Intercepts for Multi-environment Trials.. G3-GENES GENOMES GENETICS. 8:1347-1365. 2018
- An informational view of accession rarity and allele specificity in germplasm banks for management and conservation.. PLOS ONE. 13. 2018
- Genotype by tillage interaction and performance progress for bread and durum wheat genotypes on irrigated raised beds.. Field Crops Research. 216:42-52. 2018
- Mexican tropical cream cheese yield using low-fat milk induced by trans-10, cis-12 conjugated linoleic acid: effect of palmitic acid. Cyta-journal of Food. 16:311-315. 2018
- Effect of Trait Heritability, Training Population Size and Marker Density on Genomic Prediction Accuracy Estimation in 22 bi-parental Tropical Maize Populations.. Frontiers in Plant Science. 8:1916-1916. 2017
- Effect of palmitic acid on the mitigation of milk fat depression syndrome caused by trans-10, cis-12-conjugated linoleic acid in grazing dairy cows.. Archives of Animal Nutrition. 71:428-440. 2017
- Use of Hyperspectral Image Data Outperforms Vegetation Indices in Prediction of Maize Yield. Crop Science. 57:2517-2524. 2017
- Identification of in vivo induced maternal haploids in maize using seedling traits. Euphytica. 213:177. 2017
- Genomic Bayesian functional regression models with interactions for predicting wheat grain yield using hyper-spectral image data.. Plant Methods. 13:1-29. 2017
- Rapid Cycling Genomic Selection in a Multiparental Tropical Maize Population.. G3-GENES GENOMES GENETICS. 7:2315-2326. 2017
- Single‐Step Genomic and Pedigree Genotype × Environment Interaction Models for Predicting Wheat Lines in International Environments. PLANT GENOME. 10:1-15. 2017
- Genomic-Enabled Prediction in Maize Using Kernel Models with Genotype × Environment Interaction.. G3-GENES GENOMES GENETICS. 7:1995-2014. 2017
- A study of allelic diversity underlying flowering-time adaptation in maize landraces. Nature Genetics. 49:476-480. 2017
- Use of Genomic Estimated Breeding Values Results in Rapid Genetic Gains for Drought Tolerance in Maize.. PLANT GENOME. 10:1-8. 2017
- Predicting grain yield using canopy hyperspectral reflectance in wheat breeding data. Plant Methods. 13:4-4. 2017
- Bayesian Genomic Prediction with Genotype × Environment Interaction Kernel Models. G3-GENES GENOMES GENETICS. 7:41-53. 2017
- Effect of Vitamin E on Ruminal Fermentation and Nutrient Digestion in Steers Supplemented with Microencapsulated Conjugated Linoleic Acid. ANIMAL NUTRITION AND FEED TECHNOLOGY. 17:293-301. 2017
- Gains in Maize Genetic Improvement in Eastern and Southern Africa: II. CIMMYT Open-Pollinated Variety Breeding Pipeline. Crop Science. 57:180-191. 2017
- Interrelations among early vigor, flowering time, physiological maturity, and grain yield in tropical maize (Zea mays L.) under multiple abiotic stresses.. Crop Science. 57:229-242. 2017
- Identification of Genomic Associations for Adult Plant Resistance in the Background of Popular South Asian Wheat Cultivar, PBW343.. Frontiers in Plant Science. 7:1674-1674. 2016
- Genomic Prediction of Genotype × Environment Interaction Kernel Regression Models. PLANT GENOME. 9:1-20. 2016
- Identification of Tropical Maize Germplasm with Tolerance to Drought, Nitrogen Deficiency, and Combined Heat and Drought Stresses. Crop Science. 56:3031-3045. 2016
- A Hierarchical Bayesian Estimation Model for Multienvironment Plant Breeding Trials in Successive Years. Crop Science. 56:2260-2276. 2016
- Extending the Marker × Environment Interaction Model for Genomic‐Enabled Prediction and Genome‐Wide Association Analysis in Durum Wheat. Crop Science. 56:2193-2209. 2016
- Genomic Prediction of Gene Bank Wheat Landraces. G3-GENES GENOMES GENETICS. 6:1819-1834. 2016
- Genomic prediction models for grain yield of spring bread wheat in diverse agro-ecological zones. Scientific Reports. 6:27312-27312. 2016
- The Development of Quality Control Genotyping Approaches: A Case Study Using Elite Maize Lines.. PLOS ONE. 11. 2016
- Genomic Bayesian Prediction Model for Count Data with Genotype × Environment Interaction.. G3-GENES GENOMES GENETICS. 6:1165-1177. 2016
- Seasonal occurrence and molecular diversity of clostridia species spores along cheesemaking streams of 5 commercial dairy plants.. Journal of Dairy Science. 99:3358-3366. 2016
- Unlocking the genetic diversity of Creole wheats. Scientific Reports. 6:23092-23092. 2016
- Using an Airborne Platform to Measure Canopy Temperature and NDVI under Heat Stress in Maize. Journal of Crop Improvement. 29:669-690. 2015
- Genomic-Enabled Prediction of Ordinal Data with Bayesian Logistic Ordinal Regression. G3-GENES GENOMES GENETICS. 5:2113-2126. 2015
- Plasticity Region Genes jhp0940, jhp0945, jhp0947, and jhp0949 of Helicobacter pylori in Isolates from Mexican Children.. Helicobacter. 20:231-237. 2015
- A high density GBS map of bread wheat and its application for dissecting complex disease resistance traits.. BMC Genomics. 16:216-216. 2015
- Evaluation and Interpretation of Interactions. Agronomy Journal. 107:736-747. 2015
- Holistic Risk Index: A Case Study of Cattle Producers in the Protected Area of Farrapos Estuaries—Uruguay. Agroecology and Sustainable Food Systems. 39:209-223. 2015
- Enhancing laccase production by a newly-isolated strain of Pycnoporus sanguineus with high potential for dye decolouration. RSC Advances. 4:34096-34103. 2014
- Genomic-enabled prediction with classification algorithms.. Heredity. 112:616-626. 2014
- A DNA microarray-based assay to detect dual infection with two dengue virus serotypes.. Sensors. 14:7580-7601. 2014
- A reaction norm model for genomic selection using high-dimensional genomic and environmental data. Theoretical and Applied Genetics. 127:595-607. 2014
- Genomic prediction in CIMMYT maize and wheat breeding programs. Heredity. 112:48-60. 2014
- Genomic Prediction in Maize Breeding Populations with Genotyping-by-Sequencing. G3-GENES GENOMES GENETICS. 3:1903-1926. 2013
- Effectiveness of selection at CIMMYT's main maize breeding sites in Mexico for performance at sites in Africa and vice versa. Plant Breeding. 132:299-304. 2013
- Date of pruning of Guazuma ulmifolia during the rainy season affects the availability, productivity and nutritional quality of forage during the dry season. Agroforestry Systems. 87:917-927. 2013
- Genomic prediction of genetic values for resistance to wheat rusts. PLANT GENOME. 5:136-148. 2012
- Genomic Prediction of Breeding Values when Modeling Genotype × Environment Interaction using Pedigree and Dense Molecular Markers. Crop Science. 52:707-719. 2012
- In vivo expression of Helicobacter pylori virulence genes in patients with gastritis, ulcer, and gastric cancer.. Infection and Immunity. 80:594-601. 2012
- Forest biodiversity, carbon and other ecosystem services: relationships and impacts of deforestation and forest degradation 2012
- Prediction assessment of linear mixed models for multienvironment trials. Crop Science. 51:944-954. 2011
- Prediction of Genetic Values of Quantitative Traits in Plant Breeding Using Pedigree and Molecular Markers. Genetics. 186:713-724. 2010
- Biplot Analysis of Genotype × Environment Interaction: Proceed with Caution. Crop Science. 49:1564-1576. 2009
- Using Factor Analytic Models for Joining Environments and Genotypes without Crossover Genotype × Environment Interaction. Crop Science. 48:1291-1305. 2008
- Classification of Peruvian highland maize races using plant traits. Genetic Resources and Crop Evolution. 55:151-162. 2008
- Modeling Additive × Environment and Additive × Additive × Environment Using Genetic Covariances of Relatives of Wheat Genotypes. Crop Science. 47:311-320. 2007
- Modeling genotype × environment interaction using additive genetic covariances of relatives for predicting breeding values of wheat genotypes. Crop Science. 46:1722-1733. 2006
- Using linear-bilinear models for studying gene expression × treatment interaction in microarray experiments. Journal of Agricultural Biological and Environmental Statistics. 10:337-353. 2005
- Spatial analysis of cDNA microarray experiments. Crop Science. 45:748-757. 2005
- Experimental designs with repeated controls. Agrociencia. 39:679-691. 2005
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document
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review
- Genomic Selection in Plant Breeding: Methods, Models, and Perspectives. Trends in Plant Science. 961-975. 2017
- Association analysis of historical bread wheat germplasm using additive genetic covariance of relatives and population structure. Genetics. 1889-1913. 2007