selected publications
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article
- The Ontologies Community of Practice: A CGIAR Initiative for Big Data in Agrifood Systems. PATTERNS. 1:100105-100105. 2020
- COPO: a metadata platform for brokering FAIR data in the life sciences. F1000Research. 9:495. 2020
- Enabling reusability of plant phenomic datasets with MIAPPE 1.1.. New Phytologist. 227:260-273. 2020
- COPO: a metadata platform for brokering FAIR data in the life sciences. bioRxiv. 782771. 2019
- Applying FAIR Principles to Plant Phenotypic Data Management in GnpIS 2019
- The Planteome database:: an integrated resource for reference ontologies, plant genomics and phenomics. Nucleic Acids Research. 46. 2018
- AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. Database. 2018:1-32. 2018
- AgroPortal: A vocabulary and ontology repository for agronomy. Computers and Electronics in Agriculture. 144:126-143. 2018
- Developing data interoperability using standards: A wheat community use case.. F1000Research. 6:1843-1843. 2017
- Data management and best practice for plant science.. Nature plants. 3:17086. 2017
- Improving agricultural knowledge management: The AgTrials experience. F1000Research. 6:317-317. 2017
- Open Access and Open Data at CGIAR: challenges and solutions. Knowledge Management for Development Journal. 13. 2017
- The Planteome project 2016
- Measures for interoperability of phenotypic data: minimum information requirements and formatting. Plant Methods. 12:44-44. 2016
- AgroPortal: an open repository of ontologies and vocabularies for agriculture and nutrition data 2016
- Reusing the NCBO BioPortal technology for agronomy to build AgroPortal 2016
- AgroPortal : A Proposition for Ontology-Based Services in the Agronomic Domain. F1000Research. 5. 2016
- Agrobiodiversity data for supporting restoration of degraded ecosystem services 2016
- Cassavabase (cassavabase.org): an integrated field breeding and genomics database enables accelerated genetic gain in cassava: proceeding (poster) 2016
- The Crop Ontology: a source of standard traits and variables for breeding and agronomy 2016
- AgroPortal : a proposition for ontology-based services in the agronomic domain 2015
- Traits: a semantic framework for the integration of phenotypic and genotypic data 2013
- Proceedings of the 1st International Workshop on Semantics for Biodiversity 2013
- Massive sorghum collection genotyped with SSR markers to enhance use of global genetic resources. PLOS ONE. 8. 2013
- The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses. Plant and Cell Physiology. 54:1-+. 2013
- The species-specific crop ontology (Generation Challenge Programme): Application and integration into the reference plant trait ontology to enable data mining on phenotypes 2013
- Bridging the phenotypic and genetic data useful for integrated breeding through a data annotation using the Crop Ontology developed by the crop communities of practice. Frontiers in Physiology. 3:326-326. 2012
- Foundation characteristics of edible Musa triploids revealed from allelic distribution of SSR markers.. Annals of Botany. 109:937-951. 2012
- Digitization and online availability of original collecting mission data to improve data quality and enhance the conservation and use of plant genetic resources. Genetic Resources and Crop Evolution. 59:635-644. 2012
- Core Reference Sets Of Sorghum And Musa : From A Whole Collection To A Mini Core Collection And Back 2011
- Ontology-driven International Maize Information System (IMIS) for Phenotypic and Genotypic Data Exchange. Nature Precedings. 1-1. 2010
- Development of GCP Ontology for sharing crop information 2010
- Multifunctional crop trait ontology for breeders' data: field book, annotation, data discovery and semantic enrichment of the literature. Aob Plants. 2010. 2010
- The Musa Germplasm Information System enhances knowledge of banana diversity 2010
- Development of GCP Ontology for Sharing Crop Information. Nature Precedings. 4:1-1. 2009
- The crop ontology. A referenced controlled vocabulary on crop trait information for maize, wheat, chickpea, sorghum, Musa, potato and rice 2009
- A global information system for the conservation and sustainable use of Plant Genetic Resources for Food and Agriculture (PGRFA) 2008
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dataset
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document
- Developing data interoperability using standards: A wheat community use case 2017
- Improving agricultural knowledge management: The AgTrials experience 2017
- AgroPortal: a proposition for ontology-based services in the agronomic domain 2016
- Cassavabase (cassavabase.org): an integrated field breeding and genomics database enables accelerated genetic gain in cassava 2016
- Crop ontology: integration of standard variables 2016
- Final report of the Task Group on GBIF Data Fitness for Use in Agrobiodiversity 2016
- Planteome: A resource for common reference ontologies and applications for plant biology 2016
- Diversity of neglected and underutilized plant species (NUS) in perspective 2014
- Registering and uploading datasets in the generation CP central registry 2009
- A tribute to the work of Paul Allen 1999
- Musalogue: a catalogue of Musa germplasm 1997
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review
- In pursuit of a better world: crop improvement and the CGIAR. Journal of Experimental Botany. 5158-5179. 2021